Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0497300 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.5e-115 421.4 232 100.0
Os10g0495100 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 3.4e-94 350.5 231 86.6
Os10g0497432 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 6.1e-80 303.1 233 80.3
Os10g0495200 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 2.9e-69 267.7 233 73.4
Os10g0499500 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 3.2e-68 264.2 231 69.3
Os08g0248400 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 4.1e-52 210.7 239 58.2
Os08g0107800 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 3.9e-50 204.1 236 56.8
Zm00001eb345170 Zea mays HOM05D009701 ORTHO05D012112 6.9e-39 166.8 210 53.8
Os08g0107700 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.5e-38 165.6 212 54.2
Zm00001eb345130 Zea mays HOM05D009701 ORTHO05D012112 2.9e-37 161.4 211 52.6
Os08g0110200 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.3e-29 136.0 200 52.5
Zm00001eb114520 Zea mays HOM05D009701 ORTHO05D012112 3.4e-22 111.3 212 36.3
Os10g0497366 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 1.4e-20 105.9 234 37.6
Zm00001eb065260 Zea mays HOM05D009701 ORTHO05D012112 7.9e-19 100.1 177 37.9
Zm00001eb114600 Zea mays HOM05D009701 ORTHO05D012112 1.3e-18 99.4 214 32.7
Zm00001eb114690 Zea mays HOM05D009701 ORTHO05D012112 1.3e-18 99.4 214 32.7
Zm00001eb114660 Zea mays HOM05D009701 ORTHO05D012112 1.1e-17 96.3 177 36.7
Zm00001eb114490 Zea mays HOM05D009701 ORTHO05D012112 2.5e-17 95.1 174 36.8
Zm00001eb301710 Zea mays HOM05D009701 ORTHO05D012112 6.9e-15 87.0 168 43.5
MBI11_g20198_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.6e-11 75.9 163 27.0
SalBow3G2959 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.6e-11 75.9 135 31.9
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 3.6e-11 74.7 204 27.5
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 3.6e-11 74.7 204 27.5
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 6.1e-11 73.9 140 27.9
SalBow3G4038 Salvia bowleyana HOM05D000162 ORTHO05D000090 3.0e-10 71.6 145 30.3
Aqoxy4G01012 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 3.9e-10 71.2 130 32.3
Os10g0501700 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 3.9e-10 71.2 40 75.0
RcHm_v2.0_Chr4g0414121 Rosa chinensis HOM05D000162 ORTHO05D000090 1.1e-09 69.7 144 37.5
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 2.5e-09 68.6 192 29.2
MBI11_g34857_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 5.7e-09 67.4 92 35.9
SalBow3G4453 Salvia bowleyana HOM05D000162 ORTHO05D000090 7.4e-09 67.0 209 25.8
Nn3g18307 Nelumbo nucifera HOM05D000162 ORTHO05D000090 9.7e-09 66.6 114 30.7
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 1.3e-08 66.2 193 26.4
Nn5g28361 Nelumbo nucifera HOM05D000162 ORTHO05D000090 1.6e-08 65.9 117 31.6
SGA_v2.0_scaffold225G43016 Striga asiatica HOM05D000162 ORTHO05D000090 2.2e-08 65.5 194 26.8
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.2e-08 65.5 203 26.6
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 2.8e-08 65.1 202 24.3
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 2.8e-08 65.1 122 27.9
Lsat_1_v5_gn_1_11600 Lactuca sativa HOM05D000162 ORTHO05D000090 3.7e-08 64.7 146 28.8
PSO063G5422 Papaver somniferum HOM05D000162 ORTHO05D000090 3.7e-08 64.7 80 43.8
SalBow4G2488 Salvia bowleyana HOM05D000162 ORTHO05D000090 4.8e-08 64.3 161 36.0
SalBow3G3310 Salvia bowleyana HOM05D000162 ORTHO05D000090 6.3e-08 63.9 127 31.5
Migut.G00831 Erythranthe guttata HOM05D000162 ORTHO05D000090 8.2e-08 63.5 176 28.4
Actinidia06229 Actinidia chinensis HOM05D000162 ORTHO05D000090 1.1e-07 63.2 119 31.9
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 1.1e-07 63.2 137 29.9
Ah.13g076900 Amaranthus hybridus HOM05D000162 ORTHO05D000090 1.4e-07 62.8 201 29.9
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 1.8e-07 62.4 184 26.6
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.8e-07 62.4 200 24.0
SalBow7G4032 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.8e-07 62.4 126 31.7
Aqoxy4G00879 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 3.1e-07 61.6 75 38.7
CDE07G0667 Ceratophyllum demersum HOM05D001587 ORTHO05D002654 4.1e-07 61.2 196 24.5
Os04g0350000 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 4.1e-07 61.2 102 41.2
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 4.1e-07 61.2 180 25.6
SalBow1G5498 Salvia bowleyana HOM05D000162 ORTHO05D000090 4.1e-07 61.2 115 35.7
SGA_v2.0_scaffold19G08853 Striga asiatica HOM05D000162 ORTHO05D000090 4.1e-07 61.2 199 24.6
Migut.G01191 Erythranthe guttata HOM05D000162 ORTHO05D000090 5.3e-07 60.8 130 29.2
SalBow1G0248 Salvia bowleyana HOM05D000162 ORTHO05D000090 5.3e-07 60.8 115 35.7
Migut.G01199 Erythranthe guttata HOM05D000162 ORTHO05D000090 6.9e-07 60.5 129 33.3
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 9.1e-07 60.1 195 23.6
HPP92_007727 Vanilla planifolia HOM05D007383 ORTHO05D009254 1.2e-06 59.7 131 31.3
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.5e-06 59.3 197 23.4
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 1.5e-06 59.3 197 25.9
SalBow2G3114 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.5e-06 59.3 129 31.8
Cc02_g15460 Coffea canephora HOM05D000162 ORTHO05D000090 2.0e-06 58.9 165 27.3
Cc07_g18980 Coffea canephora HOM05D000162 ORTHO05D000090 2.0e-06 58.9 165 24.8
Migut.G01156 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.0e-06 58.9 95 34.7
Gorai.006G247100 Gossypium raimondii HOM05D000162 ORTHO05D000090 2.0e-06 58.9 121 31.4
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 2.0e-06 58.9 178 24.2
Peaxi162Scf00129g00156 Petunia axillaris HOM05D000162 ORTHO05D000090 2.0e-06 58.9 187 27.3
Rhsim04G0181600 Rhododendron simsii HOM05D000162 ORTHO05D000090 2.0e-06 58.9 130 28.5
SalBow3G2341 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.0e-06 58.9 196 24.0
Zm00001eb250630 Zea mays HOM05D007383 ORTHO05D009254 2.0e-06 58.9 117 48.7
Cc02_g34450 Coffea canephora HOM05D000162 ORTHO05D000090 2.6e-06 58.5 196 26.0
Migut.A01142 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.6e-06 58.5 95 34.7
Migut.G01207 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.6e-06 58.5 92 35.9
Glyma.18G228500 Glycine max HOM05D000162 ORTHO05D000090 2.6e-06 58.5 115 32.2
Gohir.D09G225500 Gossypium hirsutum HOM05D000162 ORTHO05D000090 2.6e-06 58.5 121 31.4
Nitab4.5_0000556g0140 Nicotiana tabacum HOM05D000162 ORTHO05D000090 2.6e-06 58.5 130 27.7
PSO017G5411 Papaver somniferum HOM05D000162 ORTHO05D000090 2.6e-06 58.5 103 33.0
PGR044G1745 Punica granatum HOM05D000162 ORTHO05D000090 2.6e-06 58.5 120 28.3
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 2.6e-06 58.5 138 30.4
Migut.G01170 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.4e-06 58.2 92 35.9
Migut.G01172 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.4e-06 58.2 95 34.7
Migut.G01181 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.4e-06 58.2 95 33.7
Nitab4.5_0001998g0170 Nicotiana tabacum HOM05D000162 ORTHO05D000090 3.4e-06 58.2 198 24.2
Os02g0679200 Oryza sativa ssp. japonica HOM05D007383 ORTHO05D009254 3.4e-06 58.2 121 30.6
SalBow6G6998 Salvia bowleyana HOM05D000162 ORTHO05D000090 3.4e-06 58.2 128 32.8
VMungo1383G3689 Vigna mungo HOM05D000162 ORTHO05D000090 3.4e-06 58.2 60 43.3
arahy.Tifrunner.gnm1.ann1.5GFX18 Arachis hypogaea HOM05D000162 ORTHO05D000090 4.5e-06 57.8 160 28.8
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.5e-06 57.8 172 26.2
Migut.G01162 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.5e-06 57.8 72 40.3
Migut.G01171 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.5e-06 57.8 92 34.8
Gohir.A09G223600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 4.5e-06 57.8 121 31.4
PSO421G0083 Papaver somniferum HOM05D000162 ORTHO05D000090 4.5e-06 57.8 165 31.5
PSO732G0487 Papaver somniferum HOM05D000162 ORTHO05D000090 4.5e-06 57.8 196 32.7
Peaxi162Scf00154g00321 Petunia axillaris HOM05D000162 ORTHO05D000090 4.5e-06 57.8 148 27.0
SalBow3G1792 Salvia bowleyana HOM05D000162 ORTHO05D000090 4.5e-06 57.8 145 26.9
CiPaw.08G119900 Carya illinoinensis HOM05D000162 ORTHO05D000090 5.9e-06 57.4 108 29.6
Migut.G00829 Erythranthe guttata HOM05D000162 ORTHO05D000090 5.9e-06 57.4 129 31.0
Lj1g0012010 Lotus japonicus HOM05D000162 ORTHO05D000090 5.9e-06 57.4 79 36.7
AUR62005301 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.7e-06 57.0 146 30.8
Migut.F00849 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.7e-06 57.0 190 26.8
Migut.G00832 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.7e-06 57.0 75 37.3
Migut.G01180 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.7e-06 57.0 129 30.2
SMO356G0401 Selaginella moellendorffii HOM05D007128 ORTHO05D000761 7.7e-06 57.0 143 27.3
vmacro13800 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 7.7e-06 57.0 134 29.1


User provided reference genes

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