Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.4e-87 326.2 164 100.0
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 3.8e-77 291.6 161 90.1
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 5.3e-71 271.2 157 81.5
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.2e-70 270.0 158 80.4
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 2.0e-70 269.2 158 80.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 2.6e-70 268.9 157 82.2
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 5.9e-70 267.7 163 78.5
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.3e-69 266.5 157 80.9
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.2e-69 265.8 158 80.4
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 5.0e-69 264.6 160 78.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 6.5e-69 264.2 160 78.8
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 6.5e-69 264.2 160 77.5
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 8.5e-69 263.8 160 76.2
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 8.5e-69 263.8 159 77.4
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 8.5e-69 263.8 160 76.9
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 8.5e-69 263.8 160 76.9
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 8.5e-69 263.8 159 77.4
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 8.5e-69 263.8 157 79.6
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 8.5e-69 263.8 158 79.7
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.1e-68 263.5 160 76.9
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.5e-68 263.1 158 78.5
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.9e-68 262.7 158 78.5
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.5e-68 262.3 158 75.9
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 3.2e-68 261.9 157 78.3
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.2e-68 261.9 159 76.7
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 3.2e-68 261.9 158 76.6
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 5.5e-68 261.2 157 77.7
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 9.4e-68 260.4 158 77.8
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.2e-67 260.0 157 80.3
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 1.6e-67 259.6 157 77.7
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 2.7e-67 258.8 158 75.3
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.7e-67 258.8 158 75.9
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.7e-67 258.8 158 78.5
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 2.7e-67 258.8 157 79.0
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 3.6e-67 258.5 156 77.6
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.6e-67 258.5 153 80.4
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 4.7e-67 258.1 160 75.0
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 4.7e-67 258.1 160 74.4
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 6.1e-67 257.7 160 76.2
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 8.0e-67 257.3 156 76.9
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 8.0e-67 257.3 157 77.7
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 8.0e-67 257.3 157 77.7
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.0e-66 256.9 156 76.3
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 1.0e-66 256.9 158 77.2
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.4e-66 256.5 156 76.3
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 1.4e-66 256.5 156 76.3
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 1.8e-66 256.1 158 75.3
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.3e-66 255.8 157 75.8
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 3.0e-66 255.4 156 75.0
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 4.0e-66 255.0 157 78.3
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 4.0e-66 255.0 156 76.9
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 5.2e-66 254.6 156 76.3
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 5.2e-66 254.6 156 76.3
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 5.2e-66 254.6 156 76.3
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 5.2e-66 254.6 157 75.2
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 6.7e-66 254.2 157 75.2
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 8.8e-66 253.8 157 75.8
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 2.0e-65 252.7 162 71.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 2.6e-65 252.3 156 75.6
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-64 250.0 158 73.4
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-64 250.0 158 73.4
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 1.3e-64 250.0 158 75.3
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.7e-64 249.6 157 76.4
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 2.2e-64 249.2 159 75.5
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 2.8e-64 248.8 155 72.3
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 3.7e-64 248.4 158 73.4
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 4.8e-64 248.1 158 74.1
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 4.8e-64 248.1 157 74.5
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 6.3e-64 247.7 157 73.2
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 6.3e-64 247.7 163 72.4
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 5.3e-63 244.6 155 76.1
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 9.1e-63 243.8 157 72.6
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 9.1e-63 243.8 158 71.5
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.2e-62 243.4 158 73.4
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 2.0e-62 242.7 157 72.6
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.6e-59 233.0 158 69.0
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.0e-58 230.3 158 69.0
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.3e-58 229.2 238 51.7
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 5.2e-58 228.0 160 68.8
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 6.8e-58 227.6 158 70.3
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 5.7e-57 224.6 145 73.8
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 9.8e-57 223.8 128 82.8
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.4e-55 219.9 157 70.7
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.4e-55 219.9 258 47.3
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 1.8e-55 219.5 158 67.1
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 9.1e-55 217.2 146 69.9
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.2e-54 216.9 158 64.6
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 1.6e-54 216.5 149 67.8
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.6e-54 216.5 159 65.4
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.0e-53 213.8 158 63.9
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.3e-53 212.6 128 78.1
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 3.3e-52 208.8 158 63.3
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.6e-51 206.5 158 62.0
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 2.1e-51 206.1 145 66.9
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.8e-50 203.0 156 63.5
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 4.5e-46 188.3 116 73.3
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.0e-45 187.2 142 63.4
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.3e-45 186.8 127 70.1
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 5.6e-44 181.4 107 74.8
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.6e-43 179.9 143 56.6
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 1.4e-42 176.8 108 83.3
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 8.6e-37 157.5 147 56.5
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 1.2e-35 153.7 163 49.1
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 1.2e-35 153.7 158 50.6
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.9e-28 129.8 136 54.4
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.3e-24 117.1 107 54.2
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 5.2e-18 95.1 52 75.0
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 3.4e-17 92.4 49 77.6
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 4.4e-17 92.0 49 79.6
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.7e-16 90.1 50 70.0
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 2.2e-16 89.7 52 75.0
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 4.6e-14 82.0 45 73.3
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 3.4e-09 65.9 34 82.4
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 1.4e-07 60.5 132 34.1


User provided reference genes

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