Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 0.0e+00 1124.4 593 100.0
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 3.4e-269 931.4 595 82.7
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 1.7e-204 716.5 598 62.4
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-203 713.4 596 62.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 2.3e-201 706.1 599 61.6
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 3.1e-201 705.7 597 62.0
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 5.2e-201 704.9 596 61.7
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.3e-199 700.3 596 60.6
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 1.3e-199 700.3 599 60.9
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 2.2e-199 699.5 595 60.7
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 3.2e-198 695.7 597 61.3
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 3.2e-198 695.7 598 61.0
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 3.2e-198 695.7 598 61.0
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 5.4e-198 694.9 599 61.6
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 5.4e-198 694.9 598 60.7
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 7.1e-198 694.5 598 60.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 2.7e-197 692.6 598 60.5
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 4.6e-197 691.8 594 61.3
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.0e-196 690.6 596 59.6
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.0e-196 690.6 596 59.6
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 3.0e-196 689.1 596 58.9
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 3.9e-196 688.7 596 59.1
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 5.1e-196 688.3 596 59.4
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 5.1e-196 688.3 596 59.4
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 6.6e-196 688.0 596 59.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 6.6e-196 688.0 596 60.1
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 8.6e-196 687.6 596 59.1
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 8.6e-196 687.6 596 58.9
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.1e-195 687.2 596 59.6
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 4.3e-195 685.3 596 58.6
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 4.3e-195 685.3 601 59.9
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 5.6e-195 684.9 598 59.4
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 7.3e-195 684.5 597 59.3
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 7.3e-195 684.5 598 60.2
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 7.3e-195 684.5 616 59.6
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 9.5e-195 684.1 596 60.2
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.6e-194 683.3 596 59.9
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 6.2e-194 681.4 596 58.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.4e-193 679.5 596 59.4
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 2.4e-193 679.5 596 59.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 5.2e-193 678.3 596 59.2
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 5.2e-193 678.3 616 58.9
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 6.8e-193 677.9 597 61.0
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 1.2e-192 677.2 596 58.2
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.5e-192 676.8 598 60.5
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 2.0e-192 676.4 596 59.9
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 2.6e-192 676.0 596 57.6
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.4e-192 675.6 599 58.8
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 4.4e-192 675.2 596 58.6
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 2.9e-191 672.5 596 58.1
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 3.8e-191 672.2 596 59.4
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 3.8e-191 672.2 595 59.5
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 3.8e-191 672.2 596 57.9
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 6.4e-191 671.4 596 59.7
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 6.4e-191 671.4 596 59.1
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 8.4e-191 671.0 590 59.7
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 1.9e-190 669.8 597 59.5
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.2e-190 669.1 598 59.2
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 9.2e-190 667.5 597 59.1
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 1.6e-189 666.8 596 58.9
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 2.1e-189 666.4 598 59.0
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 2.1e-189 666.4 604 58.1
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 4.6e-189 665.2 643 54.6
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 7.8e-189 664.5 590 59.8
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 1.0e-188 664.1 596 59.1
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 1.7e-188 663.3 599 58.1
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.0e-188 662.5 588 60.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 3.9e-188 662.1 595 57.5
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.1e-187 660.6 597 59.0
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 1.9e-187 659.8 630 57.6
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 5.6e-187 658.3 596 58.6
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 7.3e-187 657.9 596 58.6
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 9.6e-187 657.5 598 58.5
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 6.2e-186 654.8 596 57.0
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.1e-185 654.1 597 57.1
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 2.4e-185 652.9 603 58.2
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 4.0e-185 652.1 600 58.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 6.9e-185 651.4 599 56.3
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 9.0e-185 651.0 605 56.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.5e-184 650.2 596 56.7
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 2.6e-184 649.4 602 58.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 7.6e-184 647.9 596 57.7
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 2.2e-183 646.4 603 56.6
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 4.9e-183 645.2 607 55.7
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 8.4e-183 644.4 596 58.1
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 1.1e-182 644.0 600 57.8
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 1.1e-182 644.0 597 57.1
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 1.4e-182 643.7 596 57.6
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.9e-182 643.3 598 57.2
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 4.2e-182 642.1 596 55.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.0e-180 637.5 616 56.7
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 3.0e-180 636.0 615 55.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.1e-179 634.0 563 58.4
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 5.6e-179 631.7 630 55.2
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 1.6e-178 630.2 596 56.9
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.8e-178 629.4 597 56.8
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 2.8e-178 629.4 596 56.7
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 6.2e-178 628.2 597 58.0
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 8.1e-178 627.9 597 55.9
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 4.0e-177 625.5 626 53.8
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 5.3e-177 625.2 664 51.7
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 9.0e-177 624.4 608 56.6
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.2e-176 624.0 595 56.3
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 8.4e-175 617.8 597 55.8
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 2.4e-174 616.3 596 55.9
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 2.1e-170 603.2 596 53.9
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 9.9e-168 594.3 596 50.2
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.3e-167 594.0 602 53.5
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.7e-167 593.6 647 50.9
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.6e-162 577.0 597 50.9
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 5.3e-161 572.0 599 52.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 2.9e-159 566.2 594 53.7
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 6.5e-159 565.1 603 52.2
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.9e-158 563.5 596 50.2
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 1.1e-155 554.3 603 50.9
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.1e-153 546.2 517 56.3
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 4.4e-139 499.2 603 44.9
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 3.9e-132 476.1 413 57.6
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.9e-127 459.9 499 47.7
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.5e-120 436.0 396 58.8
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 7.7e-120 435.3 400 57.5
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.8e-119 433.0 399 58.6
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.1e-118 431.4 463 51.0
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 4.4e-115 419.5 557 44.9
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.7e-98 363.2 316 59.2
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 9.2e-97 358.6 345 54.2
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 6.6e-87 325.9 250 66.8
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 5.2e-84 316.2 661 31.5
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.1e-81 308.5 633 32.2
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 2.1e-77 294.3 266 59.4
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 6.4e-74 282.7 265 54.3
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.1e-73 282.0 631 31.5
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 2.4e-73 280.8 274 55.1
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.1e-71 273.1 559 35.2
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.5e-67 261.5 416 38.5
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 9.3e-65 252.3 220 60.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 9.3e-57 225.7 185 56.8
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-55 221.9 242 50.8
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 5.3e-52 209.9 222 50.0
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.3e-47 195.3 143 64.3
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 2.2e-42 177.9 343 38.2
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 4.2e-41 173.7 399 34.1
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.7e-40 171.0 135 60.0
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 2.7e-40 171.0 443 30.2
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 3.0e-39 167.5 172 51.2
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.3e-34 152.1 302 37.1
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.2e-34 151.4 166 49.4
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 3.2e-33 147.5 384 32.3
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 5.5e-33 146.7 392 32.4
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.0e-30 138.3 94 71.3
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.0e-30 138.3 88 73.9
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.3e-30 137.5 124 58.1
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.7e-29 134.0 346 32.9
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.7e-26 125.2 103 61.2
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 2.2e-26 124.8 98 62.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 9.4e-25 119.4 103 59.2
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.1e-24 118.2 114 54.4
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 2.3e-23 114.8 199 38.2
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.4e-22 110.5 74 70.3
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.4e-22 110.5 74 70.3
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 7.4e-22 109.8 151 45.0
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 2.4e-20 104.8 236 33.5
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 7.2e-17 93.2 76 59.2
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.7e-16 91.3 81 56.8
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 2.7e-16 91.3 119 40.3
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.4e-15 89.0 167 33.5
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.4e-15 89.0 178 34.3
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.8e-15 88.6 72 62.5
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.0e-15 87.8 99 47.5
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.1e-12 79.3 157 40.8
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.8e-12 78.6 72 59.7
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 2.0e-06 58.5 36 72.2


User provided reference genes

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