Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.6e-74 282.7 151 100.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.4e-65 253.1 151 88.7
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.1e-57 225.3 147 78.2
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.0e-56 222.6 140 79.3
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 78.6
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 78.6
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.4e-56 221.9 142 78.2
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 3.4e-56 221.9 141 80.1
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 7.6e-56 220.7 139 79.9
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.3e-55 219.9 141 78.7
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-55 219.9 140 80.7
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.7e-55 219.5 141 78.7
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 2.9e-55 218.8 147 76.9
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.9e-55 218.8 151 75.5
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.9e-55 218.8 140 77.9
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.8e-55 218.4 150 74.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 4.9e-55 218.0 140 78.6
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 4.9e-55 218.0 140 78.6
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 6.4e-55 217.6 142 77.5
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 6.4e-55 217.6 138 81.2
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 6.4e-55 217.6 137 80.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 6.4e-55 217.6 137 80.3
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 6.4e-55 217.6 141 78.7
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 8.4e-55 217.2 141 78.7
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.1e-54 216.9 139 77.7
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 4.2e-54 214.9 140 76.4
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 5.5e-54 214.5 141 77.3
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 5.5e-54 214.5 150 74.7
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 7.1e-54 214.2 141 77.3
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.1e-54 214.2 143 77.6
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.1e-54 214.2 143 77.6
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 7.1e-54 214.2 143 77.6
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 7.1e-54 214.2 140 76.4
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 9.3e-54 213.8 139 79.1
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 9.3e-54 213.8 137 77.4
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.7e-53 212.2 139 78.4
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 2.7e-53 212.2 140 77.9
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 3.5e-53 211.8 136 80.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 4.6e-53 211.5 137 76.6
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 4.6e-53 211.5 140 76.4
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.0e-53 211.1 141 76.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.0e-53 211.1 142 75.4
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 7.9e-53 210.7 140 77.9
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.9e-53 210.7 140 73.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.0e-52 210.3 142 75.4
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.3e-52 209.9 150 70.0
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.3e-52 209.9 150 70.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.3e-52 209.9 140 75.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.3e-52 209.9 142 76.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.8e-52 209.5 147 73.5
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-52 209.5 147 74.8
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.3e-52 209.1 140 75.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.3e-52 209.1 149 75.2
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 3.0e-52 208.8 132 81.1
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 6.7e-52 207.6 150 70.7
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.7e-52 207.6 139 76.3
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 8.7e-52 207.2 140 73.6
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 8.7e-52 207.2 140 73.6
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 8.7e-52 207.2 144 75.0
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.1e-51 206.8 144 74.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.5e-51 206.5 150 70.0
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.5e-51 206.5 136 77.9
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.9e-51 206.1 141 76.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 4.3e-51 204.9 150 68.7
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.3e-51 204.9 147 72.1
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.6e-51 204.5 150 69.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-50 203.0 143 74.1
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.6e-50 203.0 139 75.5
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-50 202.6 147 70.7
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-50 202.6 147 70.1
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-50 202.6 147 70.7
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 4.8e-50 201.4 150 68.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 4.8e-50 201.4 150 68.0
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 4.8e-50 201.4 150 68.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.8e-50 201.4 140 74.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 6.2e-50 201.1 150 68.0
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 6.2e-50 201.1 150 68.0
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 6.2e-50 201.1 150 68.0
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 6.2e-50 201.1 150 68.0
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 6.2e-50 201.1 140 75.0
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.1e-50 200.7 147 70.7
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.1e-50 200.7 140 73.6
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.4e-49 199.9 150 68.0
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.4e-49 199.9 150 68.0
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.4e-49 199.9 139 73.4
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.4e-49 199.9 148 68.2
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.8e-49 199.5 173 63.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 3.1e-49 198.7 137 73.7
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 9.0e-49 197.2 139 74.1
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.2e-48 196.8 139 72.7
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.2e-48 196.8 139 72.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.5e-48 196.4 151 69.5
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 4.5e-48 194.9 139 71.9
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 5.8e-48 194.5 139 71.9
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.0e-47 193.7 178 60.1
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.0e-47 193.7 139 71.9
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.0e-47 193.7 139 71.9
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.7e-47 193.0 180 60.0
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.8e-47 191.8 160 63.1
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 8.4e-47 190.7 128 76.6
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.5e-46 189.1 115 81.7
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 4.2e-46 188.3 117 81.2
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 5.5e-46 188.0 115 80.9
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 7.1e-46 187.6 115 81.7
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 7.1e-46 187.6 118 80.5
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 9.3e-46 187.2 189 55.0
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.2e-45 186.8 210 52.4
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.1e-45 186.0 122 77.9
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.7e-45 185.7 117 79.5
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.5e-45 185.3 147 66.7
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.5e-45 185.3 147 66.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.0e-45 184.5 148 66.2
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-44 183.3 122 78.7
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-44 183.3 122 78.7
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.8e-44 183.0 119 78.2
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.3e-44 182.6 126 72.2
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-44 182.2 122 78.7
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-44 182.2 122 78.7
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.0e-44 182.2 136 67.6
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 5.1e-44 181.4 113 78.8
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.7e-44 180.6 147 65.3
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.5e-43 179.9 116 77.6
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 3.3e-43 178.7 122 77.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.3e-43 178.3 122 77.0
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 5.7e-43 177.9 122 76.2
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 7.4e-43 177.6 122 76.2
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 6.3e-42 174.5 226 47.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-41 172.6 121 74.4
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 3.1e-41 172.2 137 68.6
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 5.3e-41 171.4 136 61.0
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.2e-40 170.2 117 71.8
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.2e-40 170.2 117 71.8
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.4e-40 168.7 135 66.7
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 7.6e-40 167.5 142 61.3
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.9e-39 165.6 149 56.4
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 5.0e-39 164.9 152 60.5
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.0e-36 157.1 157 56.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.2e-31 139.4 88 80.7
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.9e-30 136.3 94 73.4
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 5.5e-30 134.8 87 79.3
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.8e-28 129.8 86 72.1
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 3.0e-28 129.0 89 79.8
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 7.4e-27 124.4 139 46.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 7.4e-27 124.4 137 51.8
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 9.7e-27 124.0 200 40.0
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 2.8e-26 122.5 137 43.8
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-24 116.3 78 82.1
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-24 116.3 78 82.1
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-23 113.6 78 79.5
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.5e-23 110.9 70 78.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 3.0e-20 102.4 80 60.0
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-20 102.4 72 79.2
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.0e-19 99.8 64 78.1
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.7e-18 96.7 59 76.3
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.2e-18 96.3 59 76.3
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.7e-16 87.8 59 69.5
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.2e-15 86.3 141 32.6
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 2.2e-15 86.3 136 33.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.2e-14 81.3 69 68.1
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 3.6e-13 79.0 49 75.5
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.7e-13 78.6 69 66.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 6.7e-12 74.7 55 67.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.8e-10 68.6 52 59.6
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.0e-09 64.7 55 63.6
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.0e-09 64.7 55 63.6
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.2e-07 59.7 41 75.6


User provided reference genes

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