Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.5e-104 381.3 203 100.0
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.1e-52 209.1 199 64.3
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.8e-50 202.2 202 63.9
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.0e-31 141.0 189 53.4
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 7.6e-27 124.8 202 47.5
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 5.5e-17 92.0 170 40.6
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 5.5e-17 92.0 170 40.6
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 6.1e-16 88.6 195 36.4
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.4e-15 87.4 195 38.5
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.8e-15 87.0 173 38.7
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 6.7e-15 85.1 197 39.6
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 8.8e-15 84.7 190 35.8
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 1.1e-14 84.3 202 33.7
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.5e-14 84.0 194 36.6
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 2.0e-14 83.6 190 34.7
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 2.5e-14 83.2 194 37.1
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 2.5e-14 83.2 194 37.1
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.5e-14 83.2 198 38.4
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 3.3e-14 82.8 193 35.2
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.3e-14 82.8 196 35.7
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 4.3e-14 82.4 183 36.1
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 5.7e-14 82.0 196 37.8
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 7.4e-14 81.6 192 35.4
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 9.7e-14 81.3 190 36.3
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.3e-13 80.9 195 37.9
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.3e-13 80.9 193 36.3
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.7e-13 80.5 189 34.9
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.7e-13 80.5 187 36.9
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.7e-13 80.5 198 35.9
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.7e-13 80.5 196 35.7
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 2.2e-13 80.1 196 34.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 4.8e-13 79.0 200 33.5
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.1e-12 77.8 198 34.8
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.1e-12 77.8 201 35.8
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 1.4e-12 77.4 184 34.2
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.8e-12 77.0 193 35.2
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.8e-12 77.0 194 37.1
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.4e-12 76.6 94 50.0
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.1e-12 76.3 115 43.5
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 3.1e-12 76.3 193 36.3
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 3.1e-12 76.3 195 34.4
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.1e-12 76.3 86 51.2
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 4.1e-12 75.9 197 33.5
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 4.1e-12 75.9 200 35.0
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 6.9e-12 75.1 208 33.7
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 9.1e-12 74.7 190 36.8
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 1.5e-11 73.9 193 33.7
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.5e-11 73.9 195 34.9
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 2.0e-11 73.6 194 33.5
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.0e-11 73.6 192 33.9
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.0e-11 73.6 94 48.9
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.0e-11 73.6 94 48.9
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 2.0e-11 73.6 202 35.1
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 3.4e-11 72.8 206 35.0
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.4e-11 72.8 192 33.9
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 4.5e-11 72.4 192 33.9
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 4.5e-11 72.4 208 31.7
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 5.9e-11 72.0 104 46.2
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.9e-11 72.0 208 34.1
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.7e-11 71.6 191 34.0
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.0e-10 71.2 208 32.2
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.0e-10 71.2 206 34.5
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.7e-10 70.5 106 43.4
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.7e-10 70.5 214 31.3
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.7e-10 70.5 201 34.8
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.7e-10 70.5 196 31.6
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.7e-10 70.5 88 45.5
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.2e-10 70.1 194 31.4
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.2e-10 70.1 207 32.9
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.2e-10 70.1 193 34.2
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.9e-10 69.7 207 31.4
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.9e-10 69.7 185 33.0
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 3.8e-10 69.3 192 32.8
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.8e-10 69.3 185 33.5
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 5.0e-10 68.9 192 32.8
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 5.0e-10 68.9 200 32.5
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 6.5e-10 68.6 185 32.4
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 6.5e-10 68.6 207 33.3
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 8.5e-10 68.2 84 44.0
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.4e-09 67.4 210 36.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.9e-09 67.0 194 34.0
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.2e-09 66.2 74 45.9
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 3.2e-09 66.2 214 31.3
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 3.2e-09 66.2 186 33.9
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.2e-09 65.9 201 31.8
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 5.5e-09 65.5 195 31.8
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.2e-09 65.1 204 32.4
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 7.2e-09 65.1 204 32.4
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 7.2e-09 65.1 83 43.4
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 9.4e-09 64.7 209 33.0
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 9.4e-09 64.7 198 34.8
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.2e-08 64.3 203 33.0
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.6e-08 63.9 92 42.4
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-08 63.9 194 32.0
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-08 63.5 90 41.1
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.7e-08 63.2 214 32.2
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.6e-08 62.8 78 47.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.6e-08 62.8 104 39.4
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.6e-08 62.8 104 39.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.6e-08 62.8 74 44.6
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 4.7e-08 62.4 221 33.0
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 6.1e-08 62.0 217 31.3
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 6.1e-08 62.0 217 31.3
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 7.9e-08 61.6 203 30.0
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 7.9e-08 61.6 223 32.3
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.0e-07 61.2 208 31.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.4e-07 60.8 76 43.4
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.8e-07 60.5 221 30.8
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.3e-07 60.1 82 43.9
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 3.0e-07 59.7 83 43.4
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 3.9e-07 59.3 174 29.9
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 5.1e-07 58.9 195 30.8
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 5.1e-07 58.9 63 46.0
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 5.1e-07 58.9 221 32.1
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 6.7e-07 58.5 62 48.4
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 6.7e-07 58.5 49 59.2
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.1e-06 57.8 162 33.3
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.5e-06 57.4 205 29.3
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 2.0e-06 57.0 69 47.8
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.0e-06 57.0 204 30.9
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 2.6e-06 56.6 94 39.4
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.6e-06 56.6 151 32.5
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 3.3e-06 56.2 90 40.0
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 4.4e-06 55.8 76 40.8
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 5.7e-06 55.5 75 42.7
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 5.7e-06 55.5 184 29.9
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 7.4e-06 55.1 197 32.0
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 7.4e-06 55.1 202 27.2
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 9.7e-06 54.7 211 28.9
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 9.7e-06 54.7 75 44.0
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 9.7e-06 54.7 197 29.9


User provided reference genes

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