Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0482200 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D300363 0.0e+00 1545.8 837 100.0
Os07g0222200 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D299467 1.0e-85 322.4 877 32.5
Zm00001eb112890 Zea mays HOM05D005161 ORTHO05D006816 3.8e-40 171.0 901 26.4
Zm00001eb112870 Zea mays HOM05D005161 ORTHO05D006816 2.5e-39 168.3 884 25.8
Os06g0120200 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D020953 3.7e-35 154.5 831 26.1
Os06g0119300 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D020953 2.3e-32 145.2 821 25.8
Os06g0121200 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D020953 3.0e-29 134.8 867 25.3
Zm00001eb269260 Zea mays HOM05D005161 ORTHO05D020953 3.5e-25 121.3 849 22.1
Os06g0119100 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D020953 2.9e-24 118.2 805 23.7
Os01g0333600 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D037202 8.6e-24 116.7 591 25.9
Os06g0122200 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D020953 3.3e-23 114.8 851 23.4
Zm00001eb117790 Zea mays HOM05D005161 ORTHO05D006816 9.5e-23 113.2 542 26.6
Eucgr.D01500 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.0e-21 107.8 589 25.1
MBI18_g42473_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 5.2e-21 107.5 639 24.1
Os06g0124300 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D020953 5.2e-21 107.5 834 23.0
Os01g0373500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 1.5e-20 105.9 770 23.4
Eucgr.D01507 Eucalyptus grandis HOM05D005161 ORTHO05D006816 6.4e-19 100.5 591 23.7
Haze_06742 Corylus avellana HOM05D005161 ORTHO05D006816 8.3e-19 100.1 514 23.0
MBI18_g12380_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 8.3e-19 100.1 586 22.4
Zm00001eb131210 Zea mays HOM05D005161 ORTHO05D037202 1.9e-18 99.0 779 23.1
Eucgr.D00371 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.1e-18 97.8 600 24.5
Os02g0297200 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 4.1e-18 97.8 702 26.9
Eucgr.L02157 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.5e-17 94.7 524 23.7
Zm00001eb128430 Zea mays HOM05D005161 ORTHO05D037202 6.0e-17 94.0 544 25.0
Zm00001eb341380 Zea mays HOM05D005161 ORTHO05D006816 1.0e-16 93.2 767 21.6
Eucgr.D00400 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.5e-15 89.4 602 24.6
Eucgr.D00375 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.9e-15 89.0 354 24.9
Eucgr.D01501 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.3e-15 87.8 558 22.6
Manes.16G012100 Manihot esculenta HOM05D005161 ORTHO05D006816 5.6e-15 87.4 507 23.1
Eucgr.D00380 Eucalyptus grandis HOM05D005161 ORTHO05D006816 7.3e-15 87.0 521 24.4
Eucgr.L00332 Eucalyptus grandis HOM05D005161 ORTHO05D006816 9.5e-15 86.7 592 23.8
Eucgr.D00377 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.6e-14 85.9 589 23.1
Eucgr.D00365 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.1e-14 85.5 354 24.6
Eucgr.D00381 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.8e-14 85.1 591 23.9
Eucgr.D01492 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.8e-14 85.1 537 24.0
MBI18_g18530_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 3.6e-14 84.7 568 21.3
MBI18_g25250_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 4.7e-14 84.3 566 22.1
QL04p088669 Quercus lobata HOM05D005161 ORTHO05D006816 4.7e-14 84.3 601 20.5
QL05p075077 Quercus lobata HOM05D005161 ORTHO05D006816 8.0e-14 83.6 592 22.0
Eucgr.D00394 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.4e-13 82.8 540 23.9
Eucgr.D00362 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.3e-13 82.0 547 24.9
Eucgr.D01108 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.1e-13 81.6 428 24.5
MBI18_g01412_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 3.1e-13 81.6 584 22.6
Eucgr.D00366 Eucalyptus grandis HOM05D005161 ORTHO05D006816 5.2e-13 80.9 482 24.1
Eucgr.D00397 Eucalyptus grandis HOM05D005161 ORTHO05D006816 5.2e-13 80.9 541 24.4
Os05g0508500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 1.2e-12 79.7 574 21.6
Eucgr.D01245 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.5e-12 79.3 525 24.2
Cfa000273 Carpinus fangiana HOM05D005161 ORTHO05D006816 2.6e-12 78.6 518 24.1
Eucgr.D00810 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.6e-12 78.6 602 21.8
Os06g0117500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D299793 2.6e-12 78.6 431 24.6
Eucgr.D00403 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.4e-12 78.2 543 24.3
Eucgr.D01493 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.4e-12 77.8 537 25.0
Os07g0116300 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 4.4e-12 77.8 157 30.6
MBI18_g06807_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 5.8e-12 77.4 608 23.4
Eucgr.D00383 Eucalyptus grandis HOM05D005161 ORTHO05D006816 9.8e-12 76.6 95 42.1
Eucgr.D00807 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.3e-11 76.3 546 22.0
Eucgr.D00808 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.3e-11 76.3 509 21.8
Eucgr.D01291 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.3e-11 76.3 592 22.1
Eucgr.L00330 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.3e-11 76.3 548 23.5
Eucgr.D01495 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.7e-11 75.9 535 23.9
Eucgr.D00357 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.9e-11 75.1 155 32.3
Eucgr.D00364 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.9e-11 75.1 154 31.8
Zm00001eb298730 Zea mays HOM05D005161 ORTHO05D006816 3.7e-11 74.7 148 33.1
Eucgr.D00363 Eucalyptus grandis HOM05D005161 ORTHO05D006816 8.3e-11 73.6 547 22.7
Eucgr.D00806 Eucalyptus grandis HOM05D005161 ORTHO05D006816 8.3e-11 73.6 153 33.3
Zm00001eb118070 Zea mays HOM05D005161 ORTHO05D006816 2.4e-10 72.0 148 33.1
COL.COLO4_31730 Corchorus olitorius HOM05D005161 ORTHO05D006816 4.1e-10 71.2 562 22.8
Eucgr.D00385 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.1e-10 71.2 589 22.1
Os03g0141800 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 4.1e-10 71.2 538 23.4
MBI18_g03708_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 7.1e-10 70.5 161 31.1
Eucgr.D00809 Eucalyptus grandis HOM05D005161 ORTHO05D006816 9.2e-10 70.1 456 21.5
Eucgr.D00811 Eucalyptus grandis HOM05D005161 ORTHO05D006816 9.2e-10 70.1 491 22.2
Eucgr.D00117 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.2e-09 69.7 355 24.5
Zm00001eb283300 Zea mays HOM05D005161 ORTHO05D006816 1.2e-09 69.7 596 20.8
Eucgr.D01109 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.6e-09 69.3 486 22.6
Eucgr.D00378 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.1e-09 68.9 563 21.5
Eucgr.D00386 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.1e-09 68.9 606 23.6
Eucgr.D01505 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.1e-09 68.9 170 28.2
Cfa000271 Carpinus fangiana HOM05D005161 ORTHO05D006816 4.6e-09 67.8 363 25.9
Eucgr.L00328 Eucalyptus grandis HOM05D005161 ORTHO05D006816 6.0e-09 67.4 534 23.2
Os11g0617700 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 7.8e-09 67.0 611 22.7
Eucgr.D00389 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.0e-08 66.6 72 44.4
Eucgr.D01478 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.0e-08 66.6 498 23.7
TWI81G0680 Tripterygium wilfordii HOM05D005161 ORTHO05D006816 1.0e-08 66.6 156 30.8
QL93p0073_0706 Quercus lobata HOM05D005161 ORTHO05D006816 1.3e-08 66.2 513 22.0
Os03g0142200 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 1.7e-08 65.9 146 31.5
QL05p075122 Quercus lobata HOM05D005161 ORTHO05D006816 3.0e-08 65.1 162 29.0
Zm00001eb115180 Zea mays HOM05D005161 ORTHO05D006816 3.9e-08 64.7 56 50.0
Os11g0619500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 5.1e-08 64.3 149 28.2
MBI18_g32336_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 6.6e-08 63.9 147 32.7
TWI38G1862 Tripterygium wilfordii HOM05D005161 ORTHO05D006816 1.1e-07 63.2 508 24.2
Eucgr.D00393 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.5e-07 62.0 56 46.4
Eucgr.D00361 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.3e-07 61.2 151 25.2
Eucgr.D00368 Eucalyptus grandis HOM05D005161 ORTHO05D006816 7.3e-07 60.5 577 23.2
TWI63G0153 Tripterygium wilfordii HOM05D005161 ORTHO05D006816 9.5e-07 60.1 506 21.9
Eucgr.D01490 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.2e-06 59.7 552 22.1
Os11g0171100 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 2.1e-06 58.9 298 24.5
Eucgr.D00360 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.8e-06 58.5 349 22.9
PGR004G0999 Punica granatum HOM05D000432 ORTHO05D000320 4.7e-06 57.8 162 28.4
SEGI_37254 Sequoiadendron giganteum HOM05D005161 ORTHO05D006816 6.2e-06 57.4 84 35.7


User provided reference genes

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