Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 6.5e-45 183.7 95 100.0
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 1.5e-20 102.8 82 67.1
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 1.2e-09 66.6 51 68.6
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 1.2e-09 66.6 44 75.0
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 1.5e-09 66.2 44 68.2
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 4.4e-09 64.7 44 68.2
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 4.4e-09 64.7 44 65.9
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 5.7e-09 64.3 44 70.5
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 7.5e-09 63.9 44 68.2
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 7.5e-09 63.9 44 72.7
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 7.5e-09 63.9 44 72.7
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 7.5e-09 63.9 44 70.5
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 7.5e-09 63.9 44 70.5
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 9.8e-09 63.5 44 72.7
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 9.8e-09 63.5 44 70.5
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 1.7e-08 62.8 44 68.2
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 1.7e-08 62.8 52 63.5
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 1.7e-08 62.8 52 63.5
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 1.7e-08 62.8 52 63.5
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 1.7e-08 62.8 52 63.5
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 1.7e-08 62.8 44 68.2
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 2.2e-08 62.4 44 65.9
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.8e-08 62.0 53 67.9
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.8e-08 62.0 53 67.9
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 2.8e-08 62.0 67 53.7
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 2.8e-08 62.0 44 65.9
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 2.8e-08 62.0 44 70.5
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 3.7e-08 61.6 44 70.5
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 6.3e-08 60.8 44 68.2
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 6.3e-08 60.8 44 68.2
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 8.3e-08 60.5 45 64.4
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.1e-07 60.1 44 65.9
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 1.1e-07 60.1 44 65.9
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 1.1e-07 60.1 41 65.9
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 1.4e-07 59.7 44 63.6
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 1.4e-07 59.7 44 65.9
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.8e-07 59.3 44 63.6
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.8e-07 59.3 44 63.6
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.8e-07 59.3 44 65.9
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 1.8e-07 59.3 44 65.9
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 2.4e-07 58.9 45 66.7
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 3.1e-07 58.5 44 68.2
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 5.4e-07 57.8 44 63.6
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 9.2e-07 57.0 44 65.9
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 9.2e-07 57.0 44 59.1
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 1.6e-06 56.2 45 55.6
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 1.6e-06 56.2 45 55.6
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 2.7e-06 55.5 48 56.2
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 4.5e-06 54.7 44 56.8
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 5.9e-06 54.3 36 69.4
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 7.8e-06 53.9 44 61.4


User provided reference genes

Program Settings