Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.0e-156 555.8 299 100.0
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.6e-92 342.8 296 66.2
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.5e-84 317.0 225 67.1
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.3e-72 276.6 251 64.5
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 3.9e-72 275.8 233 57.9
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.5e-71 273.9 237 57.0
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.5e-71 273.9 232 56.9
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 9.7e-71 271.2 222 58.1
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.7e-70 270.4 224 58.0
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-70 270.0 273 50.2
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 3.7e-70 269.2 237 55.7
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.7e-70 269.2 274 50.4
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.3e-70 268.5 273 50.2
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.1e-69 267.7 222 57.7
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.8e-69 266.9 237 55.3
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.8e-69 266.9 291 48.8
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.4e-69 266.5 237 54.0
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 3.1e-69 266.2 274 48.5
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 7.0e-69 265.0 228 56.1
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 1.2e-68 264.2 222 56.3
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.2e-68 264.2 222 56.3
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.6e-68 263.1 237 55.3
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.6e-68 263.1 237 55.7
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.5e-68 262.7 235 54.5
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.5e-68 262.7 237 55.3
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.5e-68 262.7 237 55.3
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 3.5e-68 262.7 237 54.4
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 5.9e-68 261.9 228 54.4
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.0e-67 261.2 237 54.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.3e-67 260.8 222 55.0
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.3e-67 260.8 225 54.7
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.3e-67 260.8 222 57.2
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.3e-67 260.8 222 55.4
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.7e-67 260.4 226 55.3
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.7e-67 260.4 222 56.8
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.8e-67 259.2 227 55.5
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 5.0e-67 258.8 222 57.2
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 6.5e-67 258.5 222 54.5
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 6.5e-67 258.5 239 54.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 6.5e-67 258.5 222 56.3
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 8.5e-67 258.1 228 57.0
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 8.5e-67 258.1 222 55.9
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.1e-66 257.7 222 54.5
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.1e-66 257.7 222 55.9
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.5e-66 257.3 222 54.5
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.5e-66 256.5 232 54.3
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.5e-66 256.5 222 54.5
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 3.2e-66 256.1 233 52.8
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.2e-66 256.1 222 54.1
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 4.2e-66 255.8 306 45.1
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 4.2e-66 255.8 222 55.9
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 4.2e-66 255.8 228 53.5
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 5.5e-66 255.4 233 52.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 5.5e-66 255.4 222 53.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 5.5e-66 255.4 222 55.0
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 5.5e-66 255.4 222 54.1
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.5e-66 255.4 222 55.4
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 7.2e-66 255.0 223 55.6
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 7.2e-66 255.0 225 55.6
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 9.4e-66 254.6 222 54.1
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 9.4e-66 254.6 222 53.2
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 9.4e-66 254.6 222 53.2
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 9.4e-66 254.6 297 47.8
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.2e-65 254.2 222 54.5
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.2e-65 254.2 233 54.9
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.6e-65 253.8 222 52.7
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 6.1e-65 251.9 234 55.6
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.0e-64 251.1 226 53.1
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-64 250.8 222 52.7
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 3.0e-64 249.6 243 52.3
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.0e-64 249.6 228 53.1
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 5.2e-64 248.8 222 53.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-63 247.7 253 49.4
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.5e-63 247.3 218 55.5
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 4.4e-63 245.7 229 54.1
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 2.8e-62 243.0 225 52.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-61 240.7 222 51.8
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.8e-61 240.4 232 50.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 3.1e-61 239.6 234 54.3
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 5.3e-61 238.8 222 50.9
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.0e-60 236.9 254 47.6
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.0e-60 236.9 211 53.1
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.7e-60 236.5 239 50.6
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 5.9e-60 235.3 201 53.7
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 5.9e-60 235.3 207 53.6
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 5.9e-60 235.3 204 55.4
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 5.9e-60 235.3 227 51.1
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 7.7e-60 235.0 191 58.6
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.7e-59 233.8 222 50.0
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 2.2e-59 233.4 228 51.8
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 2.2e-59 233.4 237 49.8
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 2.2e-59 233.4 221 51.1
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 5.0e-59 232.3 207 51.7
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.2e-57 227.6 260 45.8
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.4e-56 224.2 229 52.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.3e-56 223.4 231 50.2
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 9.8e-55 218.0 224 51.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.3e-54 215.3 232 49.1
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 8.3e-54 214.9 239 46.4
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.1e-53 214.5 183 59.0
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.6e-52 210.7 234 44.4
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 8.6e-51 204.9 249 44.6
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 4.2e-50 202.6 175 54.9
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 5.5e-50 202.2 173 56.6
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 6.1e-49 198.7 219 47.9
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.4e-45 187.6 222 41.9
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 1.4e-45 187.6 192 50.5
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 2.7e-44 183.3 237 42.2
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.0e-43 181.4 227 42.3
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.9e-42 177.2 145 53.1
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 2.5e-42 176.8 273 39.2
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.4e-39 166.4 141 53.9
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 2.9e-38 163.3 232 40.5
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 4.6e-36 156.0 224 40.6
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 8.9e-32 141.7 226 38.5
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.6e-31 140.2 169 45.6
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 5.8e-31 139.0 118 55.9
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 6.6e-27 125.6 112 54.5
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.4e-21 107.8 99 48.5
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.0e-19 101.7 136 38.2
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.3e-19 101.3 177 34.5
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.7e-19 100.9 130 43.1
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 5.1e-19 99.4 79 51.9
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 4.3e-18 96.3 79 50.6
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 7.3e-18 95.5 79 49.4
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 5.8e-15 85.9 80 48.8
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 1.3e-11 74.7 78 48.7
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.3e-11 73.9 136 30.9
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.1e-10 71.6 80 42.5
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 2.4e-08 63.9 111 33.3
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 3.1e-08 63.5 52 59.6
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.5e-07 61.2 197 23.9
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.7e-06 57.8 65 44.6
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 2.2e-06 57.4 230 25.2


User provided reference genes

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