Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 5.7e-206 720.7 365 100.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.2e-166 590.1 364 84.3
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 9.2e-132 474.2 361 66.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.3e-130 470.3 330 69.1
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.2e-128 463.8 319 73.0
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.2e-128 463.8 307 74.3
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 4.7e-128 461.8 331 69.2
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 8.1e-128 461.1 303 73.6
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.1e-127 460.7 305 73.8
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.4e-127 460.3 340 66.2
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.4e-127 459.5 324 69.4
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 3.1e-127 459.1 314 70.4
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.1e-127 459.1 330 67.0
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 5.2e-127 458.4 307 72.6
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 6.8e-127 458.0 307 72.3
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 8.9e-127 457.6 350 66.3
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 4.4e-126 455.3 307 72.0
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 7.6e-126 454.5 326 67.8
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 7.6e-126 454.5 300 72.7
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.7e-125 453.4 324 68.5
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 2.9e-125 452.6 328 69.2
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 3.8e-125 452.2 309 71.2
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 4.9e-125 451.8 302 73.5
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 8.4e-125 451.1 334 66.5
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.1e-124 450.7 328 68.6
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.1e-124 450.7 301 71.1
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.9e-124 449.9 330 68.2
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 7.1e-124 448.0 329 67.8
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 7.1e-124 448.0 301 71.1
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.6e-123 446.8 350 64.6
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-123 446.8 305 72.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 2.1e-123 446.4 341 66.3
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.7e-123 446.0 324 67.9
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 6.0e-123 444.9 335 67.5
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 6.0e-123 444.9 339 66.1
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.0e-122 444.1 332 66.3
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.0e-122 444.1 305 71.8
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.3e-122 443.7 302 71.5
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.7e-122 443.4 331 68.3
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.7e-122 443.4 321 66.7
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 8.7e-122 441.0 300 72.0
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.1e-121 440.7 336 65.2
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.1e-121 440.7 326 66.0
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.9e-121 439.9 321 67.3
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.9e-121 439.9 331 65.9
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.6e-121 438.3 301 69.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.6e-121 438.3 312 70.8
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 7.3e-121 438.0 301 71.8
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 7.3e-121 438.0 321 66.0
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 9.6e-121 437.6 323 65.0
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.3e-120 437.2 299 68.9
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.1e-120 436.4 320 65.9
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 6.2e-120 434.9 310 69.0
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 8.1e-120 434.5 305 68.9
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 8.1e-120 434.5 303 70.3
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 8.1e-120 434.5 310 70.3
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.8e-119 433.3 302 69.9
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.4e-119 433.0 292 72.9
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.4e-119 433.0 302 69.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 3.1e-119 432.6 330 66.1
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 6.9e-119 431.4 306 67.0
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 6.9e-119 431.4 325 66.2
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.2e-118 430.6 317 66.6
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.5e-118 430.3 301 69.8
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 3.4e-118 429.1 327 64.5
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.7e-117 426.8 329 65.7
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.7e-117 426.8 296 67.9
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.9e-117 426.0 337 62.3
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.8e-117 425.6 367 60.8
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.4e-117 424.9 301 67.4
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 6.4e-117 424.9 325 63.1
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 8.4e-117 424.5 300 67.7
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-116 424.1 301 67.4
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 2.4e-116 422.9 363 59.8
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 2.1e-115 419.9 326 65.0
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 6.0e-115 418.3 348 61.2
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.9e-115 417.9 357 60.2
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 3.0e-114 416.0 312 65.4
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 5.1e-114 415.2 333 62.5
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 1.1e-113 414.1 302 66.9
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-113 413.3 302 65.6
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.9e-113 413.3 302 65.6
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.3e-113 412.5 301 65.1
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.3e-113 412.5 347 60.2
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.6e-113 411.0 345 59.7
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.6e-112 410.2 300 67.3
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 6.9e-111 404.8 300 66.7
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.4e-110 402.5 401 53.9
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 4.9e-109 398.7 292 66.1
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.5e-107 392.5 307 64.8
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.8e-103 380.2 271 69.0
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.8e-103 380.2 271 69.0
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.0e-101 374.4 254 72.8
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-99 367.1 271 64.2
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.5e-99 365.9 335 56.4
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.1e-97 360.9 280 62.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.9e-97 360.1 291 61.2
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 6.1e-91 338.6 299 55.9
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 6.7e-90 335.1 298 58.7
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-89 334.3 300 53.7
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-89 333.6 299 55.2
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-88 330.5 297 54.2
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 4.8e-88 328.9 293 54.6
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-87 327.4 300 53.0
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-87 327.0 294 54.8
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.3e-87 325.5 294 56.1
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.3e-87 325.5 294 54.8
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 5.3e-87 325.5 294 54.4
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 9.0e-87 324.7 300 52.7
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 9.0e-87 324.7 294 54.4
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.5e-86 322.4 293 55.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.0e-85 321.2 293 54.9
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.7e-85 320.5 218 69.7
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.7e-85 320.5 299 52.2
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.8e-85 319.3 298 53.7
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-84 317.8 293 52.9
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.4e-84 317.4 220 70.5
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.9e-84 317.0 292 54.1
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.2e-84 316.2 300 52.7
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.5e-84 315.5 206 75.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.2e-84 315.1 300 53.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 9.4e-84 314.7 217 66.4
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 9.4e-84 314.7 298 52.3
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 4.6e-83 312.4 293 53.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 3.9e-82 309.3 274 56.6
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-81 307.8 307 50.2
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.5e-81 306.6 301 51.8
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.3e-81 305.8 292 51.0
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 5.7e-81 305.4 294 51.0
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 7.4e-81 305.1 294 51.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 7.4e-81 305.1 294 51.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.8e-80 303.1 294 49.3
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.8e-80 303.1 298 51.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.8e-80 302.4 294 50.3
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 8.2e-80 301.6 218 63.3
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-79 300.4 301 50.8
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 4.1e-79 299.3 301 50.8
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 6.9e-79 298.5 301 50.5
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 9.1e-79 298.1 304 50.3
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-76 290.8 295 49.5
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-76 289.7 280 53.2
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.7e-73 278.9 272 50.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-68 263.8 351 42.7
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-68 263.5 279 49.8
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-68 263.1 299 48.8
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 2.1e-67 260.4 285 49.1
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.7e-61 240.7 258 47.7
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 2.9e-61 240.0 209 58.9
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.8e-58 230.7 304 44.4
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 9.1e-55 218.4 256 46.5
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-53 214.9 190 55.8
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.0e-53 214.9 190 55.8
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.2e-53 213.8 221 51.6
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.7e-51 206.8 373 36.5
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.6e-46 191.0 188 50.5
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 8.6e-45 185.3 189 54.0
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 6.6e-37 159.1 150 54.7
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-36 158.3 128 55.5
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-36 157.9 303 33.0
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 8.0e-35 152.1 128 53.9
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 8.0e-35 152.1 128 53.9
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 5.4e-31 139.4 157 50.3
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 8.6e-29 132.1 108 54.6
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.3e-28 129.0 85 75.3
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.9e-23 114.4 99 59.6
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 3.2e-23 113.6 491 25.9
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.8e-10 69.3 77 50.6


User provided reference genes

Program Settings