Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 2.3e-182 642.1 324 100.0
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 1.0e-113 414.1 325 67.4
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 6.0e-66 255.4 301 45.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 8.6e-65 251.5 294 48.3
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 1.9e-64 250.4 293 46.1
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.8e-63 246.5 292 45.2
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.4e-62 244.2 290 48.6
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 2.0e-61 240.4 298 44.3
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.4e-61 239.6 292 45.2
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 7.6e-61 238.4 286 45.8
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 9.9e-61 238.0 294 44.2
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.7e-60 237.3 298 44.0
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 1.7e-60 237.3 294 44.2
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.2e-60 236.9 294 44.2
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.9e-60 236.5 294 45.9
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 8.4e-60 235.0 298 46.6
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 9.3e-59 231.5 294 46.3
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 4.6e-58 229.2 286 44.4
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 3.0e-57 226.5 285 41.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 8.7e-57 224.9 290 42.4
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.1e-56 224.6 286 44.8
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 4.3e-56 222.6 301 42.9
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.6e-55 220.7 323 40.2
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 2.1e-55 220.3 296 40.5
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 2.1e-55 220.3 280 43.9
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.8e-55 219.9 312 41.7
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.6e-55 219.5 263 46.4
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 6.2e-55 218.8 306 40.8
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 1.8e-54 217.2 295 43.1
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.8e-54 217.2 298 44.0
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 2.4e-54 216.9 324 40.7
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 3.1e-54 216.5 252 47.6
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 6.9e-54 215.3 301 41.5
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 2.0e-53 213.8 299 41.5
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 2.6e-53 213.4 303 40.9
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 7.6e-53 211.8 286 43.4
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.3e-52 211.1 292 41.8
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.3e-52 211.1 292 41.8
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 1.3e-52 211.1 312 41.7
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 1.7e-52 210.7 319 42.0
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 2.2e-52 210.3 319 42.3
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.9e-52 209.1 292 41.8
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 4.9e-52 209.1 302 41.4
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 8.4e-52 208.4 302 41.4
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.9e-51 207.2 292 41.1
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 2.4e-51 206.8 286 43.4
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 3.2e-51 206.5 282 41.1
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 5.4e-51 205.7 302 41.1
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 5.4e-51 205.7 282 42.9
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 1.2e-50 204.5 323 42.7
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.6e-50 204.1 296 41.6
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.1e-50 203.8 295 41.0
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 2.7e-50 203.4 285 40.7
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 6.0e-50 202.2 298 41.6
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.0e-49 201.4 323 39.3
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.3e-49 201.1 307 39.4
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.7e-49 200.7 308 41.6
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 2.3e-49 200.3 283 41.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 3.0e-49 199.9 304 41.1
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 5.1e-49 199.1 273 46.2
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 8.7e-49 198.4 298 39.3
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.1e-48 198.0 303 38.6
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 1.3e-47 194.5 283 42.4
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 4.8e-47 192.6 284 40.1
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 8.1e-47 191.8 283 40.3
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 8.1e-47 191.8 290 38.6
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 3.1e-46 189.9 304 38.5
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 4.0e-46 189.5 283 39.9
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 5.3e-46 189.1 283 39.6
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 5.3e-46 189.1 284 40.5
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 9.0e-46 188.3 323 39.3
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 9.9e-45 184.9 301 36.5
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 2.9e-44 183.3 323 36.5
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 6.4e-44 182.2 314 37.6
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 8.4e-44 181.8 282 39.4
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 2.4e-43 180.3 282 38.7
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.2e-43 179.9 351 34.8
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 5.4e-43 179.1 390 33.8
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 4.6e-42 176.0 282 38.3
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.0e-41 174.9 289 39.1
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 4.0e-38 162.9 300 39.3
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.5e-37 161.0 306 36.3
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.4e-37 159.8 272 39.0
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 4.5e-37 159.5 286 37.8
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 4.9e-36 156.0 221 42.1
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.9e-35 154.1 205 44.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.9e-35 154.1 247 36.8
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 3.2e-35 153.3 277 39.0
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 4.2e-35 152.9 290 37.6
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 3.0e-33 146.7 291 35.4
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 3.9e-33 146.4 245 37.6
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 8.7e-33 145.2 174 43.7
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 9.6e-32 141.7 352 31.0
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.3e-31 141.4 268 36.6
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 5.3e-30 136.0 264 38.6
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.2e-28 130.6 156 45.5
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 3.8e-28 129.8 281 32.4
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.9e-27 127.5 122 50.8
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 6.1e-26 122.5 112 49.1
Cpa.g.sc30.17 Carica papaya HOM05D002270 ORTHO05D002866 8.7e-25 118.6 167 41.9
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 1.8e-22 110.9 122 43.4
QL93p0107_0362 Quercus lobata HOM05D002270 ORTHO05D002866 3.1e-22 110.2 147 44.2
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.2e-21 108.2 287 31.4
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 1.9e-19 100.9 104 47.1
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 2.1e-18 97.4 162 40.1
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 2.1e-18 97.4 149 38.9
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 4.6e-18 96.3 87 52.9
SEGI_39038 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.3e-15 88.2 154 39.6
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 6.3e-15 85.9 292 26.7
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.4e-14 84.7 113 38.9
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.0e-13 80.9 231 29.4
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.0e-12 78.6 99 43.4
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 8.5e-12 75.5 147 40.8
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.1e-11 75.1 60 51.7
SEGI_19104 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.2e-11 73.6 165 34.5
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 1.6e-10 71.2 86 41.9
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 5.1e-09 66.2 132 31.8


User provided reference genes

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