Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 0.0e+00 1699.1 846 100.0
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 0.0e+00 1163.7 675 83.3
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.3e-242 843.6 820 52.8
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.5e-230 802.0 822 49.8
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.6e-227 793.5 841 49.7
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 2.3e-226 789.6 817 49.7
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 3.1e-223 779.2 850 48.8
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 9.4e-220 767.7 832 48.3
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 2.1e-219 766.5 865 47.3
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 7.9e-219 764.6 837 48.3
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.0e-218 764.2 793 49.7
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.0e-218 764.2 827 47.6
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 3.0e-218 762.7 827 48.5
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 9.7e-217 757.7 807 48.6
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 3.7e-216 755.7 818 47.4
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.5e-214 750.4 822 46.8
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.5e-214 750.4 836 45.8
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.5e-214 750.4 816 48.8
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 2.6e-214 749.6 833 47.3
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.3e-213 747.3 829 47.8
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.4e-212 743.8 834 46.8
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.2e-212 742.7 819 47.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 7.2e-212 741.5 829 46.6
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.6e-211 740.3 823 47.6
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 6.1e-211 738.4 848 46.6
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.4e-210 737.3 850 45.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 6.7e-210 734.9 857 46.4
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.5e-209 733.8 828 47.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.5e-209 733.8 841 45.7
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.5e-209 733.8 832 46.6
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 4.4e-209 732.3 815 46.7
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 5.7e-209 731.9 841 44.7
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 4.8e-208 728.8 823 46.7
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 8.2e-208 728.0 815 46.9
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.0e-207 724.9 823 46.3
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 9.1e-207 724.5 800 47.6
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.2e-206 724.2 837 45.9
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.5e-206 722.2 818 45.8
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 5.0e-205 718.8 818 47.3
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.5e-204 717.2 812 44.2
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.5e-204 717.2 841 45.3
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.9e-204 716.8 841 44.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.9e-204 716.8 825 46.5
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.9e-204 716.8 795 46.3
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.9e-204 716.8 835 45.7
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 7.2e-204 714.9 828 46.5
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.2e-203 714.1 826 46.4
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.7e-203 713.0 805 47.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 4.7e-203 712.2 830 44.8
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 6.1e-203 711.8 835 45.1
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.4e-202 710.7 826 44.9
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.8e-202 710.3 784 48.3
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 3.0e-202 709.5 840 45.1
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 5.2e-202 708.8 782 47.8
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 5.2e-202 708.8 833 45.6
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 8.8e-202 708.0 836 45.7
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 8.8e-202 708.0 828 46.0
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 4.4e-201 705.7 826 45.5
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 4.4e-201 705.7 826 45.6
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 3.7e-200 702.6 858 44.5
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 6.3e-200 701.8 841 45.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 8.2e-200 701.4 835 44.6
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.4e-199 700.7 827 44.1
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 2.7e-198 696.4 820 43.8
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 2.7e-198 696.4 832 45.4
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 4.5e-198 695.7 830 44.1
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.7e-197 693.7 834 45.6
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.2e-197 693.3 825 45.1
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.9e-197 693.0 837 44.0
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 3.8e-197 692.6 822 45.4
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 2.5e-196 689.9 821 45.3
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.2e-196 689.1 802 43.8
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.2e-195 687.6 819 45.2
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 2.1e-195 686.8 825 45.5
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 6.1e-195 685.3 821 45.1
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 6.1e-195 685.3 831 43.4
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 8.0e-195 684.9 821 44.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-194 684.5 841 43.3
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.8e-194 683.7 821 44.8
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.3e-194 683.3 839 43.7
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 2.0e-193 680.2 825 44.5
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 4.4e-193 679.1 818 44.7
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 4.4e-193 679.1 833 44.3
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.3e-192 677.6 826 44.6
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 2.2e-192 676.8 821 44.0
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.8e-192 676.4 781 45.5
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 2.8e-192 676.4 815 44.3
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 6.3e-192 675.2 783 47.0
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.1e-191 674.5 821 44.0
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.4e-191 674.1 717 49.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.8e-191 673.7 821 43.7
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 3.5e-190 669.5 815 44.3
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.5e-190 669.1 808 43.9
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.2e-189 666.8 784 45.3
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 2.9e-189 666.4 821 43.2
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 2.9e-189 666.4 821 43.2
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.5e-189 665.2 884 41.5
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.1e-188 664.5 916 41.6
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.5e-188 664.1 836 42.9
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 4.7e-187 659.1 844 43.0
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 2.3e-186 656.8 827 43.8
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.2e-186 655.6 841 42.3
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 5.7e-185 652.1 844 42.7
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.4e-183 647.5 810 44.8
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-182 644.0 834 43.6
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 3.8e-181 639.4 715 48.0
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.5e-177 627.5 841 41.1
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 9.8e-177 624.8 729 45.3
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.4e-175 620.2 831 41.5
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.6e-174 617.5 729 45.4
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 3.5e-174 616.3 809 40.8
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 5.0e-165 585.9 792 41.9
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 7.3e-164 582.0 694 43.8
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.9e-162 575.1 688 44.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 7.5e-161 572.0 711 45.6
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 3.0e-157 560.1 687 44.7
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.9e-157 559.7 647 45.1
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 9.5e-156 555.1 506 53.8
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.2e-143 513.1 794 35.3
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 3.0e-141 506.9 860 37.2
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.3e-140 503.1 728 40.2
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 9.3e-135 485.3 704 40.1
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 7.4e-132 475.7 606 41.6
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 4.8e-115 419.9 385 53.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.2e-113 415.2 752 34.3
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.9e-112 410.6 339 60.8
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.4e-105 387.1 342 57.0
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.1e-103 382.1 464 42.7
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.5e-103 380.9 761 32.1
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 6.9e-98 362.8 559 37.9
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 9.1e-98 362.5 806 30.4
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 3.4e-97 360.5 896 28.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 3.2e-95 354.0 480 42.1
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 4.8e-91 340.1 327 51.4
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.8e-80 303.9 347 42.9
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 2.1e-78 298.1 509 33.0
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 5.2e-69 266.9 285 47.0
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.8e-69 266.5 494 34.0
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-66 259.2 434 35.5
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.0e-61 242.7 440 34.1
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 3.0e-56 224.6 376 34.6
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.0e-48 199.5 196 49.5
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.5e-39 168.3 281 34.5
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.6e-38 165.6 181 48.1
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 6.2e-38 163.7 177 50.8
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 8.4e-27 126.7 116 45.7
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-21 109.4 107 50.5
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 5.4e-18 97.4 103 56.3
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 6.7e-16 90.5 171 30.4
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.2e-11 75.5 113 34.5
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 6.4e-11 73.9 62 50.0
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-08 65.9 68 42.6
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 6.7e-08 63.9 36 72.2
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 2.1e-06 58.9 148 29.7


User provided reference genes

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