Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 3.8e-152 541.6 295 100.0
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 2.1e-94 349.7 224 72.8
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 3.6e-94 349.0 221 75.1
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 6.2e-94 348.2 225 75.1
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 8.1e-94 347.8 222 73.9
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 8.1e-94 347.8 232 71.1
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.4e-93 347.1 222 73.4
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 3.1e-93 345.9 223 74.9
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 3.1e-93 345.9 217 76.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 4.0e-93 345.5 248 69.0
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 4.0e-93 345.5 236 71.2
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 4.0e-93 345.5 265 65.3
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 2.0e-92 343.2 231 73.2
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.0e-92 343.2 222 72.5
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.0e-92 343.2 220 75.0
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 3.4e-92 342.4 227 73.6
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 4.4e-92 342.0 226 71.7
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 4.4e-92 342.0 215 75.3
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 4.4e-92 342.0 226 73.0
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 4.4e-92 342.0 247 68.8
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.4e-92 342.0 252 67.9
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.4e-92 342.0 252 67.9
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 4.4e-92 342.0 235 72.3
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 5.8e-92 341.7 242 69.8
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 5.8e-92 341.7 232 71.6
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 5.8e-92 341.7 218 74.8
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 5.8e-92 341.7 214 75.7
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 7.5e-92 341.3 249 68.7
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 7.5e-92 341.3 223 74.4
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 9.9e-92 340.9 242 68.6
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 9.9e-92 340.9 248 69.0
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.3e-91 340.5 256 66.4
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 1.7e-91 340.1 234 69.7
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 2.2e-91 339.7 220 74.1
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 2.9e-91 339.3 271 64.9
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 2.9e-91 339.3 271 64.9
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 3.7e-91 339.0 261 66.3
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 4.9e-91 338.6 259 66.0
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 4.9e-91 338.6 217 74.2
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-90 337.0 262 66.0
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-90 337.0 262 66.0
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-90 337.0 262 66.4
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-90 337.0 262 66.4
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.4e-90 337.0 262 66.0
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 1.9e-90 336.7 229 72.1
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.9e-90 336.7 222 71.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 5.4e-90 335.1 237 67.1
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 7.1e-90 334.7 223 70.4
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 7.1e-90 334.7 248 67.7
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 7.1e-90 334.7 273 62.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 7.1e-90 334.7 253 66.4
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 9.2e-90 334.3 260 64.6
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 9.2e-90 334.3 230 72.2
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 1.6e-89 333.6 232 69.0
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.1e-89 333.2 245 66.9
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 3.5e-89 332.4 211 73.0
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 4.6e-89 332.0 241 65.6
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 6.0e-89 331.6 252 66.7
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 7.8e-89 331.3 254 65.4
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.0e-88 330.9 211 73.0
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.3e-88 330.5 255 65.5
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.7e-88 330.1 221 70.6
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 2.3e-88 329.7 250 65.2
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.3e-88 329.7 226 69.5
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 3.0e-88 329.3 230 67.8
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 8.6e-88 327.8 248 65.7
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.1e-87 327.4 230 70.9
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.1e-87 327.4 233 68.7
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.9e-87 326.6 223 68.6
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 4.3e-87 325.5 248 65.7
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 5.6e-87 325.1 212 71.2
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.2e-86 323.9 220 69.1
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 3.6e-86 322.4 250 65.2
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 6.2e-86 321.6 233 68.7
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.8e-85 320.1 261 62.8
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 5.2e-85 318.5 220 70.5
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 8.9e-85 317.8 211 69.2
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 2.0e-84 316.6 227 68.7
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 9.9e-84 314.3 229 67.2
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.9e-84 314.3 193 76.7
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 9.9e-84 314.3 217 67.7
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.7e-83 313.5 243 64.6
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 2.9e-83 312.8 219 68.9
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 8.4e-83 311.2 251 64.5
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.4e-82 310.5 258 62.4
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 4.6e-81 305.4 258 61.2
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 1.9e-79 300.1 214 68.2
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 9.6e-79 297.7 256 58.6
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 6.2e-78 295.0 227 65.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 3.1e-77 292.7 199 71.9
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 2.1e-70 270.0 220 57.7
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 5.3e-69 265.4 213 58.7
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.1e-66 257.7 175 70.3
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 3.0e-64 249.6 218 55.0
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 5.6e-63 245.4 212 56.6
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 5.6e-55 218.8 192 59.4
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 4.8e-54 215.7 242 47.9
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 6.2e-54 215.3 190 54.7
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.4e-53 214.2 213 48.8
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 3.4e-52 209.5 162 61.7
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 2.2e-51 206.8 162 61.7
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 9.3e-50 201.4 165 58.8
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.1e-47 194.5 186 57.5
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.4e-47 191.8 141 63.8
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 2.2e-46 190.3 159 61.0
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 7.9e-41 171.8 131 64.1
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 3.9e-40 169.5 160 74.4
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.7e-39 164.9 154 54.5
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.7e-38 164.1 132 60.6
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 2.2e-38 163.7 100 76.0
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.0e-32 144.8 86 75.6
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.0e-29 132.1 75 84.0
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.0e-29 132.1 75 84.0
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 7.2e-18 95.5 232 29.3
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 2.3e-16 90.5 90 52.2
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 5.5e-10 69.3 40 75.0
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 3.0e-08 63.5 233 23.6
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 6.8e-08 62.4 227 22.9
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.2e-07 61.6 220 23.2
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 2.0e-07 60.8 48 54.2
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 4.4e-07 59.7 240 22.1
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 1.7e-06 57.8 60 51.7
DCAR_032298 Daucus carota HOM05D006384 ORTHO05D007917 6.3e-06 55.8 39 71.8
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 6.3e-06 55.8 223 22.9


User provided reference genes

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