Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 1.5e-44 182.6 97 100.0
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 6.0e-22 107.5 94 61.7
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 2.1e-19 99.0 93 52.7
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 2.0e-17 92.4 93 57.0
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 3.4e-17 91.7 74 59.5
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 3.4e-17 91.7 95 52.6
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 4.5e-17 91.3 74 60.8
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 5.8e-17 90.9 70 61.4
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 7.6e-17 90.5 57 68.4
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 1.3e-16 89.7 61 67.2
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 1.3e-16 89.7 61 67.2
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.7e-16 89.4 68 60.3
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.7e-16 89.4 65 61.5
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 1.7e-16 89.4 59 66.1
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 2.2e-16 89.0 57 64.9
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 2.2e-16 89.0 63 65.1
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 2.2e-16 89.0 71 60.6
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 3.8e-16 88.2 97 46.4
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 3.8e-16 88.2 69 62.3
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 3.8e-16 88.2 86 52.3
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 4.9e-16 87.8 57 64.9
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 6.5e-16 87.4 71 57.7
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 6.5e-16 87.4 71 57.7
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 6.5e-16 87.4 72 54.2
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 8.4e-16 87.0 65 60.0
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 1.1e-15 86.7 91 49.5
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 1.1e-15 86.7 74 56.8
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 1.4e-15 86.3 61 63.9
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 1.4e-15 86.3 61 63.9
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 1.4e-15 86.3 61 65.6
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 1.4e-15 86.3 61 62.3
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 1.4e-15 86.3 89 50.6
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 1.9e-15 85.9 84 47.6
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 1.9e-15 85.9 61 60.7
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.9e-15 85.9 71 56.3
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 1.9e-15 85.9 58 67.2
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 1.9e-15 85.9 69 59.4
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 2.5e-15 85.5 68 57.4
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 2.5e-15 85.5 97 48.5
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 2.5e-15 85.5 60 60.0
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 2.5e-15 85.5 69 55.1
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 3.2e-15 85.1 73 54.8
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 3.2e-15 85.1 94 48.9
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 3.2e-15 85.1 58 65.5
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 5.5e-15 84.3 86 50.0
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 5.5e-15 84.3 60 60.0
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 5.5e-15 84.3 60 60.0
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 5.5e-15 84.3 57 63.2
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 5.5e-15 84.3 85 50.6
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 7.1e-15 84.0 64 60.9
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 7.1e-15 84.0 61 59.0
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 7.1e-15 84.0 57 64.9
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 7.1e-15 84.0 64 59.4
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 9.3e-15 83.6 58 63.8
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 9.3e-15 83.6 73 54.8
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 9.3e-15 83.6 63 60.3
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 9.3e-15 83.6 54 70.4
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 1.2e-14 83.2 57 61.4
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 1.2e-14 83.2 68 58.8
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 1.2e-14 83.2 93 48.4
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 1.6e-14 82.8 63 58.7
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 1.6e-14 82.8 78 53.8
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 2.1e-14 82.4 58 63.8
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 2.1e-14 82.4 55 63.6
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 2.1e-14 82.4 79 51.9
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 3.5e-14 81.6 54 68.5
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 3.5e-14 81.6 64 59.4
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 3.5e-14 81.6 74 56.8
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 3.5e-14 81.6 58 65.5
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 4.6e-14 81.3 57 64.9
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 4.6e-14 81.3 58 60.3
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 1.3e-13 79.7 71 49.3
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 1.3e-13 79.7 71 49.3
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 5.1e-13 77.8 75 50.7
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 4.3e-12 74.7 67 52.2
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 1.6e-11 72.8 86 47.7
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 2.8e-11 72.0 58 55.2
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 1.8e-10 69.3 59 52.5
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 4.1e-10 68.2 65 50.8
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 1.0e-08 63.5 46 58.7
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 1.0e-08 63.5 39 66.7
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 1.3e-08 63.2 39 61.5
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 5.0e-08 61.2 41 68.3
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 5.0e-08 61.2 61 45.9
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 6.5e-08 60.8 38 71.1
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 2.5e-07 58.9 45 60.0
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 3.2e-07 58.5 39 56.4
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 1.2e-06 56.6 38 63.2
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 1.6e-06 56.2 37 62.2
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 6.1e-06 54.3 44 54.5
PSO170G0729 Papaver somniferum HOM05D066428 ORTHO05D009711 6.1e-06 54.3 72 41.7


User provided reference genes

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