Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0413600 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 2.1e-103 379.4 253 100.0
Zm00001eb048190 Zea mays HOM05D000355 ORTHO05D000227 2.3e-57 226.5 261 63.2
Os04g0413900 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 2.6e-40 169.9 259 57.5
Zm00001eb083770 Zea mays HOM05D000355 ORTHO05D000227 1.5e-35 154.1 264 53.8
Ca_09022_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 2.2e-15 87.0 132 56.1
MSTRG.26626 Avicennia marina HOM05D000355 ORTHO05D000227 1.9e-14 84.0 255 34.1
Prupe.6G134100 Prunus persica HOM05D000355 ORTHO05D000227 1.9e-14 84.0 257 35.0
ECA248G0772 Erigeron canadensis HOM05D000355 ORTHO05D000227 3.2e-14 83.2 258 34.5
Hma1.2p1_0820F.1_g223991 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 4.1e-14 82.8 255 33.3
Hma1.2p1_0820F.1_g224010 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 4.1e-14 82.8 255 33.3
Oeu010769.1 Olea europaea HOM05D000355 ORTHO05D000227 9.2e-14 81.6 257 33.5
Medtr7g105130 Medicago truncatula HOM05D000355 ORTHO05D000227 1.2e-13 81.3 251 38.2
Nitab4.5_0001875g0060 Nicotiana tabacum HOM05D000355 ORTHO05D000227 1.6e-13 80.9 267 33.7
TPR.G23308 Trifolium pratense HOM05D000355 ORTHO05D000227 2.1e-13 80.5 135 51.9
Lsat_1_v5_gn_5_165660 Lactuca sativa HOM05D000355 ORTHO05D000227 2.7e-13 80.1 261 34.9
Psat3g031640 Pisum sativum HOM05D000355 ORTHO05D000227 2.7e-13 80.1 138 50.7
Dinv21173 Davidia involucrata HOM05D000355 ORTHO05D000227 3.9e-12 76.3 262 32.4
HPP92_001103 Vanilla planifolia HOM05D000355 ORTHO05D000227 1.5e-11 74.3 125 45.6
Cc06_g06130 Coffea canephora HOM05D000355 ORTHO05D000227 1.9e-11 73.9 259 33.2
Cpa.g.sc195.12 Carica papaya HOM05D000355 ORTHO05D000227 2.5e-11 73.6 123 42.3
HanXRQChr13g0390171 Helianthus annuus HOM05D000355 ORTHO05D000227 5.6e-11 72.4 264 32.6
Nitab4.5_0001933g0070 Nicotiana tabacum HOM05D000355 ORTHO05D000227 7.3e-11 72.0 264 31.8
Lj3g0007377 Lotus japonicus HOM05D000355 ORTHO05D000227 1.6e-10 70.9 126 48.4
CAN.G397.83 Capsicum annuum HOM05D000355 ORTHO05D000227 2.1e-10 70.5 136 41.2
Lalb_Chr01g0018021 Lupinus albus HOM05D000355 ORTHO05D000227 2.1e-10 70.5 129 48.1
SGA_v2.0_scaffold22G09853 Striga asiatica HOM05D000355 ORTHO05D000227 2.1e-10 70.5 249 30.9
VMungo1383G1562 Vigna mungo HOM05D000355 ORTHO05D000227 2.1e-10 70.5 129 47.3
MBI17_g46127_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 2.8e-10 70.1 262 32.1
Nitab4.5_0009390g0020 Nicotiana tabacum HOM05D000355 ORTHO05D000227 2.8e-10 70.1 262 31.3
PGR102G1031 Punica granatum HOM05D000355 ORTHO05D000227 2.8e-10 70.1 251 31.1
Dinv31715 Davidia involucrata HOM05D000355 ORTHO05D000227 3.6e-10 69.7 256 32.4
Eucgr.K02567 Eucalyptus grandis HOM05D000355 ORTHO05D000227 3.6e-10 69.7 258 33.3
Ciclev10030109m.g Citrus clementina HOM05D000355 ORTHO05D000227 4.7e-10 69.3 126 42.9
Zm00001eb406900 Zea mays HOM05D000355 ORTHO05D000227 4.7e-10 69.3 110 44.5
Glyma.19G195700 Glycine max HOM05D000355 ORTHO05D000227 8.1e-10 68.6 139 49.6
Oeu002366.1 Olea europaea HOM05D000355 ORTHO05D000227 1.1e-09 68.2 247 34.8
Sopen09g004880 Solanum pennellii HOM05D000355 ORTHO05D000227 1.1e-09 68.2 256 31.2
TWI31G0922 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 1.1e-09 68.2 262 40.5
Dinv22826 Davidia involucrata HOM05D000052 ORTHO05D001127 1.4e-09 67.8 115 44.3
RcHm_v2.0_Chr5g0046711 Rosa chinensis HOM05D000355 ORTHO05D000227 1.4e-09 67.8 135 48.1
SGA_v2.0_scaffold184G39985 Striga asiatica HOM05D000355 ORTHO05D000227 1.4e-09 67.8 259 31.7
CANSAT54G1123 Cannabis sativa HOM05D000355 ORTHO05D000227 1.8e-09 67.4 120 43.3
SalBow5G1208 Salvia bowleyana HOM05D000355 ORTHO05D000227 1.8e-09 67.4 260 30.8
TWI79G1323 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 1.8e-09 67.4 266 36.1
CSS0023293 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.4e-09 67.0 115 40.9
Cfa016641 Carpinus fangiana HOM05D000355 ORTHO05D000227 2.4e-09 67.0 258 31.4
AUR62006222 Chenopodium quinoa HOM05D000355 ORTHO05D000227 2.4e-09 67.0 249 30.5
MSTRG.21035 Avicennia marina HOM05D000355 ORTHO05D000227 3.1e-09 66.6 252 37.7
Glyma.11G182200 Glycine max HOM05D000355 ORTHO05D000227 3.1e-09 66.6 104 55.8
Gohir.A09G096300 Gossypium hirsutum HOM05D000355 ORTHO05D000227 3.1e-09 66.6 101 44.6
Gohir.D09G096000 Gossypium hirsutum HOM05D000355 ORTHO05D000227 3.1e-09 66.6 101 44.6
Gorai.006G112700 Gossypium raimondii HOM05D000355 ORTHO05D000227 3.1e-09 66.6 101 44.6
Sopen10g032740 Solanum pennellii HOM05D000355 ORTHO05D000227 3.1e-09 66.6 262 30.9
Migut.L01800 Erythranthe guttata HOM05D000355 ORTHO05D000227 4.0e-09 66.2 260 30.4
Glyma.13G315700 Glycine max HOM05D000355 ORTHO05D000227 4.0e-09 66.2 127 52.0
Lalb_Chr03g0028171 Lupinus albus HOM05D000355 ORTHO05D000227 4.0e-09 66.2 255 42.0
DCAR_013411 Daucus carota HOM05D000355 ORTHO05D000227 5.2e-09 65.9 262 32.4
PSO384G1848 Papaver somniferum HOM05D000355 ORTHO05D000227 5.2e-09 65.9 102 51.0
SGA_v2.0_scaffold177G39419 Striga asiatica HOM05D000355 ORTHO05D000227 5.2e-09 65.9 252 37.3
Lj1g0025147 Lotus japonicus HOM05D000355 ORTHO05D000227 6.9e-09 65.5 125 41.6
Solyc09g010140.3 Solanum lycopersicum HOM05D000355 ORTHO05D000227 6.9e-09 65.5 264 31.1
TAR629G2272 Trochodendron aralioides HOM05D000355 ORTHO05D000227 6.9e-09 65.5 132 39.4
CiPaw.13G134300 Carya illinoinensis HOM05D000355 ORTHO05D000227 9.0e-09 65.1 124 41.9
FAN21G1533 Fragaria x ananassa HOM05D000355 ORTHO05D000227 9.0e-09 65.1 100 47.0
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 9.0e-09 65.1 254 30.7
Ah.15g090800 Amaranthus hybridus HOM05D000355 ORTHO05D000227 1.5e-08 64.3 127 40.2
Cfa009997 Carpinus fangiana HOM05D000355 ORTHO05D000227 1.5e-08 64.3 124 42.7
COL.COLO4_34022 Corchorus olitorius HOM05D000355 ORTHO05D000227 1.5e-08 64.3 120 40.0
Lj2A967T30 Lonicera japonica HOM05D000355 ORTHO05D000227 1.5e-08 64.3 101 54.5
Oeu027157.1 Olea europaea HOM05D000355 ORTHO05D000227 1.5e-08 64.3 115 40.0
PGSC0003DMG400028250 Solanum tuberosum HOM05D000355 ORTHO05D000227 1.5e-08 64.3 262 30.9
Glyma.12G185900 Glycine max HOM05D000355 ORTHO05D000227 2.0e-08 63.9 125 53.6
Phvul.001G191900 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 2.0e-08 63.9 254 37.4
Phvul.005G122700 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 2.0e-08 63.9 124 42.7
CSS0014070 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.6e-08 63.5 256 29.7
CSS0037359 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.6e-08 63.5 256 29.7
FAN25G0540 Fragaria x ananassa HOM05D000355 ORTHO05D000227 2.6e-08 63.5 257 37.0
PGR042G1763 Punica granatum HOM05D000355 ORTHO05D000227 2.6e-08 63.5 102 44.1
SalBow6G0298 Salvia bowleyana HOM05D000355 ORTHO05D000227 2.6e-08 63.5 247 32.4
PGSC0003DMG400008941 Solanum tuberosum HOM05D000355 ORTHO05D000227 2.6e-08 63.5 255 30.2
GSVIVG01033884001 Vitis vinifera HOM05D000355 ORTHO05D000227 2.6e-08 63.5 131 41.2
Lj3g0023877 Lotus japonicus HOM05D000355 ORTHO05D000227 3.4e-08 63.2 51 60.8
Solyc03g082610.1 Solanum lycopersicum HOM05D000355 ORTHO05D000227 3.4e-08 63.2 128 39.8
TAR633G1747 Trochodendron aralioides HOM05D000355 ORTHO05D000227 3.4e-08 63.2 136 39.0
CiPaw.10G012000 Carya illinoinensis HOM05D000355 ORTHO05D000227 4.4e-08 62.8 248 28.6
PSO339G5944 Papaver somniferum HOM05D000355 ORTHO05D000227 4.4e-08 62.8 275 32.7
RcHm_v2.0_Chr3g0474691 Rosa chinensis HOM05D000355 ORTHO05D000227 4.4e-08 62.8 248 32.3
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.4e-08 62.8 241 33.2
Sopen06g030700 Solanum pennellii HOM05D000355 ORTHO05D000227 4.4e-08 62.8 252 30.6
TWI74G0135 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 4.4e-08 62.8 275 30.9
arahy.Tifrunner.gnm1.ann1.I99STC Arachis hypogaea HOM05D000355 ORTHO05D000227 5.8e-08 62.4 124 51.6
FvH4_3g25360 Fragaria vesca HOM05D000355 ORTHO05D000227 5.8e-08 62.4 138 39.9
AUR62036996 Chenopodium quinoa HOM05D000355 ORTHO05D000227 7.6e-08 62.0 252 29.8
Nitab4.5_0000319g0390 Nicotiana tabacum HOM05D000355 ORTHO05D000227 7.6e-08 62.0 129 39.5
PGSC0003DMG400040473 Solanum tuberosum HOM05D000355 ORTHO05D000227 7.6e-08 62.0 128 39.8
Ah.08g210430 Amaranthus hybridus HOM05D000355 ORTHO05D000227 9.9e-08 61.6 258 31.4
MELO3C009492.2 Cucumis melo HOM05D000355 ORTHO05D000227 9.9e-08 61.6 130 41.5
FAN09G4885 Fragaria x ananassa HOM05D000355 ORTHO05D000227 9.9e-08 61.6 250 39.6
PSO801G0353 Papaver somniferum HOM05D000355 ORTHO05D000227 9.9e-08 61.6 274 32.1
CSS0036298 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 1.3e-07 61.2 125 48.8
Duzib168G0847 Durio zibethinus HOM05D000355 ORTHO05D000227 1.3e-07 61.2 268 30.2
Eucgr.B03837 Eucalyptus grandis HOM05D000355 ORTHO05D000227 1.3e-07 61.2 130 41.5
FvH4_6g19420 Fragaria vesca HOM05D000355 ORTHO05D000227 1.3e-07 61.2 250 40.4
TAR375G0501 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.3e-07 61.2 134 39.6
Cc02_g01070 Coffea canephora HOM05D000355 ORTHO05D000227 1.7e-07 60.8 128 38.3
Lalb_Chr19g0136411 Lupinus albus HOM05D000355 ORTHO05D000227 1.7e-07 60.8 51 66.7
MBI12_g30972_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 1.7e-07 60.8 128 38.3
Manes.11G163200 Manihot esculenta HOM05D000355 ORTHO05D000227 1.7e-07 60.8 51 62.7
Sopen03g022370 Solanum pennellii HOM05D000355 ORTHO05D000227 1.7e-07 60.8 130 38.5
CAN.G841.17 Capsicum annuum HOM05D000355 ORTHO05D000227 2.2e-07 60.5 263 30.0
CsaV3_3G037490 Cucumis sativus L. HOM05D000355 ORTHO05D000227 2.2e-07 60.5 130 43.8
Glyma.12G091000 Glycine max HOM05D000355 ORTHO05D000227 2.2e-07 60.5 109 51.4
Solyc10g083260.1 Solanum lycopersicum HOM05D000355 ORTHO05D000227 2.2e-07 60.5 51 66.7
PGSC0003DMG400005883 Solanum tuberosum HOM05D000355 ORTHO05D000227 2.2e-07 60.5 256 30.1
Zm00001eb147040 Zea mays HOM05D000355 ORTHO05D000227 2.2e-07 60.5 125 41.6
Actinidia07916 Actinidia chinensis HOM05D000355 ORTHO05D000227 2.9e-07 60.1 258 29.8
Sed0022708 Sechium edule HOM05D000355 ORTHO05D000227 2.9e-07 60.1 268 29.5
Actinidia07253 Actinidia chinensis HOM05D000355 ORTHO05D000227 3.8e-07 59.7 129 38.8
CiPaw.08G121500 Carya illinoinensis HOM05D000355 ORTHO05D000227 3.8e-07 59.7 102 43.1
HanXRQChr15g0485551 Helianthus annuus HOM05D000355 ORTHO05D000227 3.8e-07 59.7 133 45.9
Os03g0113900 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 3.8e-07 59.7 33 84.8
Potri.016G076300 Populus trichocarpa HOM05D000355 ORTHO05D000227 3.8e-07 59.7 123 40.7
QL07p038276 Quercus lobata HOM05D000355 ORTHO05D000227 3.8e-07 59.7 250 29.6
Rhsim13G0112800 Rhododendron simsii HOM05D000355 ORTHO05D000227 3.8e-07 59.7 252 38.9
unitig_0.g1475 Utricularia gibba HOM05D000355 ORTHO05D000227 3.8e-07 59.7 134 38.1
HPP92_001970 Vanilla planifolia HOM05D001558 ORTHO05D005808 3.8e-07 59.7 48 64.6
A01p38890 Brassica napus HOM05D000355 ORTHO05D000227 6.4e-07 58.9 124 39.5
CAN.G481.66 Capsicum annuum HOM05D000355 ORTHO05D000227 6.4e-07 58.9 130 38.5
Duzib093G1640 Durio zibethinus HOM05D000355 ORTHO05D000227 6.4e-07 58.9 128 39.1
Peaxi162Scf00091g00063 Petunia axillaris HOM05D000355 ORTHO05D000227 6.4e-07 58.9 107 43.0
Sc02g0000430 Simmondsia chinensis HOM05D000355 ORTHO05D000227 6.4e-07 58.9 259 32.0
THA.LOC104814786 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 6.4e-07 58.9 129 41.9
BcaB06g25345 Brassica carinata HOM05D000355 ORTHO05D000227 8.4e-07 58.5 246 34.1
CsaV3_1G014950 Cucumis sativus L. HOM05D000355 ORTHO05D000227 8.4e-07 58.5 271 29.9
HanXRQChr04g0110201 Helianthus annuus HOM05D000355 ORTHO05D000227 8.4e-07 58.5 130 36.9
MD14G1030000 Malus domestica HOM05D000355 ORTHO05D000227 8.4e-07 58.5 249 31.7
Os11g0154300 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 8.4e-07 58.5 126 42.1
Zm00001eb427680 Zea mays HOM05D000355 ORTHO05D000227 8.4e-07 58.5 134 36.6
Actinidia06128 Actinidia chinensis HOM05D000355 ORTHO05D000227 1.1e-06 58.2 129 40.3
BcaC01g03900 Brassica carinata HOM05D000355 ORTHO05D000227 1.1e-06 58.2 121 44.6
CsaV3_1G015860 Cucumis sativus L. HOM05D000355 ORTHO05D000227 1.1e-06 58.2 120 40.0
ECA232G4379 Erigeron canadensis HOM05D000355 ORTHO05D000227 1.1e-06 58.2 134 38.8
FAN02G1600 Fragaria x ananassa HOM05D000355 ORTHO05D000227 1.1e-06 58.2 250 40.8
Rhsim09G0208300 Rhododendron simsii HOM05D000355 ORTHO05D000227 1.1e-06 58.2 124 38.7
MELO3C004692.2 Cucumis melo HOM05D000355 ORTHO05D000227 1.4e-06 57.8 271 29.9
Lj3A901T81 Lonicera japonica HOM05D000355 ORTHO05D000227 1.4e-06 57.8 101 38.6
Manes.09G052900 Manihot esculenta HOM05D000355 ORTHO05D000227 1.4e-06 57.8 133 46.6
Os01g0862600 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 1.4e-06 57.8 259 39.4
Os12g0156000 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 1.4e-06 57.8 32 87.5
Phvul.011G095300 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 1.4e-06 57.8 101 49.5
C03p47390 Brassica napus HOM05D000355 ORTHO05D000227 1.9e-06 57.4 124 37.9
BolC3t17009H Brassica oleracea HOM05D000355 ORTHO05D000227 1.9e-06 57.4 124 37.9
BraA01t03935Z Brassica rapa HOM05D000355 ORTHO05D000227 1.9e-06 57.4 124 38.7
QL01p012022 Quercus lobata HOM05D000355 ORTHO05D000227 1.9e-06 57.4 118 40.7
HPP92_014456 Vanilla planifolia HOM05D000355 ORTHO05D000227 1.9e-06 57.4 134 35.8
ATR0620G020 Amborella trichopoda HOM05D000355 ORTHO05D000227 2.4e-06 57.0 132 39.4
EL10Ac7g16878 Beta vulgaris HOM05D000355 ORTHO05D000227 2.4e-06 57.0 32 87.5
COL.COLO4_03549 Corchorus olitorius HOM05D000355 ORTHO05D000227 2.4e-06 57.0 116 41.4
GSVIVG01038612001 Vitis vinifera HOM05D000355 ORTHO05D000227 2.4e-06 57.0 51 58.8
AagrBONN_evm.TU.Sc2ySwM_228.5491 Anthoceros agrestis HOM05D000355 ORTHO05D000227 3.2e-06 56.6 50 64.0
CiPaw.07G206400 Carya illinoinensis HOM05D000355 ORTHO05D000227 3.2e-06 56.6 122 36.9
Migut.D02435 Erythranthe guttata HOM05D000355 ORTHO05D000227 3.2e-06 56.6 100 38.0
HanXRQChr11g0337281 Helianthus annuus HOM05D000355 ORTHO05D000227 3.2e-06 56.6 132 41.7
SEGI_15611 Sequoiadendron giganteum HOM05D000355 ORTHO05D000227 3.2e-06 56.6 101 40.6
Aa31LG8G2250 Aethionema arabicum HOM05D000355 ORTHO05D000227 4.2e-06 56.2 127 44.1
EL10Ac7g16334 Beta vulgaris HOM05D000355 ORTHO05D000227 4.2e-06 56.2 249 34.5
CDE11G1106 Ceratophyllum demersum HOM05D000355 ORTHO05D000227 4.2e-06 56.2 51 58.8
Eucgr.J00504 Eucalyptus grandis HOM05D000355 ORTHO05D000227 4.2e-06 56.2 98 43.9
Gohir.A10G012800 Gossypium hirsutum HOM05D000355 ORTHO05D000227 4.2e-06 56.2 48 60.4
Lsat_1_v5_gn_9_50340 Lactuca sativa HOM05D000355 ORTHO05D000227 4.2e-06 56.2 254 29.9
Mapoly0006s0294 Marchantia polymorpha HOM05D000355 ORTHO05D000227 5.4e-06 55.8 137 40.1
Oeu041815.1 Olea europaea HOM05D000355 ORTHO05D000227 5.4e-06 55.8 134 39.6
SEGI_31743 Sequoiadendron giganteum HOM05D000355 ORTHO05D000227 5.4e-06 55.8 105 41.0
TAR636G3066 Trochodendron aralioides HOM05D000355 ORTHO05D000227 5.4e-06 55.8 264 28.8
Zm00001eb404040 Zea mays HOM05D000355 ORTHO05D000227 5.4e-06 55.8 105 52.4
Actinidia18675 Actinidia chinensis HOM05D000355 ORTHO05D000227 7.1e-06 55.5 124 38.7
BcaC09g51179 Brassica carinata HOM05D000355 ORTHO05D000227 7.1e-06 55.5 48 64.6
A01p13280 Brassica napus HOM05D000355 ORTHO05D000227 7.1e-06 55.5 48 64.6
C01p16020 Brassica napus HOM05D000355 ORTHO05D000227 7.1e-06 55.5 48 64.6
BolC1t01563H Brassica oleracea HOM05D000355 ORTHO05D000227 7.1e-06 55.5 48 64.6
BraA01t01271Z Brassica rapa HOM05D000355 ORTHO05D000227 7.1e-06 55.5 48 64.6
Peaxi162Scf00306g00022 Petunia axillaris HOM05D000355 ORTHO05D000227 7.1e-06 55.5 51 56.9
Sabra06G0161400 Salix brachista HOM05D000355 ORTHO05D000227 7.1e-06 55.5 120 39.2
SalBow4G1698 Salvia bowleyana HOM05D000355 ORTHO05D000227 7.1e-06 55.5 110 53.6
TAR626G1504 Trochodendron aralioides HOM05D000355 ORTHO05D000227 7.1e-06 55.5 51 58.8


User provided reference genes

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