Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 7.0e-57 223.8 118 100.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.2e-33 145.2 118 67.8
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 9.6e-30 133.7 116 63.8
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.3e-23 113.2 61 83.6
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.3e-23 113.2 61 83.6
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 2.3e-23 112.5 62 79.0
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.9e-23 111.7 62 79.0
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 3.9e-23 111.7 62 79.0
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 6.6e-23 110.9 62 79.0
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 6.6e-23 110.9 60 78.3
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.1e-22 110.2 62 77.4
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.1e-22 110.2 62 77.4
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.1e-22 110.2 62 77.4
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.9e-22 109.4 56 83.9
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 2.5e-22 109.0 66 72.7
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 2.5e-22 109.0 61 78.7
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.5e-22 109.0 61 78.7
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 3.3e-22 108.6 60 78.3
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 3.3e-22 108.6 60 78.3
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 3.3e-22 108.6 60 75.0
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.3e-22 108.2 60 76.7
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 4.3e-22 108.2 69 72.5
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 5.6e-22 107.8 61 77.0
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 5.6e-22 107.8 61 77.0
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 5.6e-22 107.8 61 77.0
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 5.6e-22 107.8 72 72.2
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 7.3e-22 107.5 62 75.8
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 7.3e-22 107.5 62 75.8
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 9.6e-22 107.1 59 78.0
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 9.6e-22 107.1 61 73.8
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.3e-21 106.7 59 76.3
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.3e-21 106.7 59 76.3
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.3e-21 106.7 59 76.3
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.3e-21 106.7 61 78.7
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.1e-21 105.9 78 65.4
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.1e-21 105.9 64 78.1
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.1e-21 105.9 64 78.1
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.1e-21 105.9 62 75.8
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.8e-21 105.5 61 75.4
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.8e-21 105.5 60 75.0
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 2.8e-21 105.5 59 74.6
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.8e-21 105.5 59 74.6
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.6e-21 105.1 55 81.8
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 3.6e-21 105.1 55 81.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.6e-21 105.1 75 65.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 4.8e-21 104.8 67 71.6
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.8e-21 104.8 55 80.0
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 4.8e-21 104.8 60 73.3
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.8e-21 104.8 70 70.0
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.8e-21 104.8 60 76.7
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 4.8e-21 104.8 59 74.6
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.2e-21 104.4 62 72.6
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 6.2e-21 104.4 60 76.7
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.1e-20 103.6 56 80.4
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.1e-20 103.6 62 71.0
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.1e-20 103.6 61 72.1
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.4e-20 103.2 54 81.5
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.4e-20 103.2 62 72.6
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.8e-20 102.8 59 78.0
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.8e-20 102.8 104 52.9
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 2.4e-20 102.4 58 77.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.4e-20 102.4 57 75.4
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.4e-20 102.4 62 71.0
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 2.4e-20 102.4 55 78.2
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 3.1e-20 102.1 61 72.1
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 3.1e-20 102.1 59 76.3
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.0e-20 101.7 59 78.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 4.0e-20 101.7 62 72.6
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 5.3e-20 101.3 61 77.0
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 5.3e-20 101.3 61 77.0
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 9.0e-20 100.5 61 72.1
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 9.0e-20 100.5 61 72.1
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 9.0e-20 100.5 61 72.1
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 9.0e-20 100.5 57 73.7
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.2e-19 100.1 61 75.4
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.5e-19 99.8 60 75.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.5e-19 99.8 62 69.4
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.5e-19 99.8 60 76.7
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.0e-19 99.4 126 50.8
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 2.0e-19 99.4 60 71.7
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.0e-19 99.4 57 73.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.6e-19 99.0 64 71.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.6e-19 99.0 64 71.9
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 2.6e-19 99.0 51 76.5
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.6e-19 99.0 61 70.5
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.6e-19 99.0 60 71.7
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.6e-19 99.0 62 69.4
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 3.4e-19 98.6 82 58.5
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 3.4e-19 98.6 82 58.5
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 3.4e-19 98.6 60 71.7
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 4.5e-19 98.2 112 50.0
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 5.8e-19 97.8 61 70.5
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.8e-19 97.8 61 68.9
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.6e-19 97.4 62 67.7
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 9.9e-19 97.1 103 51.5
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 1.7e-18 96.3 57 78.9
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.7e-18 96.3 51 82.4
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 2.9e-18 95.5 62 67.7
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 4.9e-18 94.7 96 52.1
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 4.9e-18 94.7 92 63.0
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.4e-18 94.4 55 72.7
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 8.4e-18 94.0 62 69.4
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 8.4e-18 94.0 65 66.2
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.1e-17 93.6 62 66.1
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.1e-17 93.6 67 65.7
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.4e-17 93.2 95 53.7
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.4e-17 93.2 89 53.9
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.4e-17 93.2 53 75.5
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 4.2e-17 91.7 73 60.3
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 4.2e-17 91.7 52 73.1
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 4.2e-17 91.7 73 60.3
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 5.4e-17 91.3 60 66.7
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 5.4e-17 91.3 52 75.0
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 7.1e-17 90.9 61 67.2
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 9.3e-17 90.5 64 67.2
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.7e-16 89.0 117 46.2
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 4.6e-16 88.2 93 52.7
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 4.6e-16 88.2 52 71.2
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 6.0e-16 87.8 52 69.2
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.3e-15 86.7 73 56.2
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.8e-15 86.3 112 46.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 3.0e-15 85.5 119 50.4
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.9e-14 82.8 51 68.6
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.3e-13 80.1 51 68.6
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 2.8e-13 79.0 49 69.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 6.2e-13 77.8 67 61.2
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 1.8e-12 76.3 121 43.0
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.5e-11 73.2 78 48.7
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 4.2e-09 65.1 36 75.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.1e-09 64.3 36 80.6
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 9.3e-09 63.9 35 82.9
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 9.3e-09 63.9 35 82.9
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.2e-08 63.5 62 59.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.2e-08 63.5 44 70.5
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 2.7e-08 62.4 35 80.0
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.0e-08 61.2 60 53.3
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 7.9e-08 60.8 35 71.4
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.0e-07 60.5 36 75.0
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.3e-07 60.1 75 49.3
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 5.1e-07 58.2 62 51.6
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.1e-06 57.0 31 87.1
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 9.6e-06 53.9 69 50.7


User provided reference genes

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