Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 0.0e+00 1397.5 711 100.0
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.8e-248 862.8 581 75.6
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.7e-222 776.5 745 54.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.7e-222 776.5 771 53.2
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.2e-222 776.2 764 52.6
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 3.2e-221 772.3 713 55.0
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.5e-220 768.8 714 55.3
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.0e-219 767.3 731 53.2
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.3e-219 766.9 740 52.4
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 5.1e-219 765.0 757 53.2
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 8.7e-219 764.2 727 54.6
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.5e-218 763.5 730 53.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.3e-218 762.3 736 53.5
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.3e-217 760.4 742 53.2
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.8e-216 756.5 718 54.0
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.1e-216 755.7 752 52.5
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.5e-215 753.4 731 54.3
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.0e-215 753.1 736 53.8
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 3.4e-215 752.3 734 53.4
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 3.4e-215 752.3 728 53.2
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 7.6e-215 751.1 719 53.7
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-214 750.4 744 52.4
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 8.4e-214 747.7 713 53.3
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.1e-213 747.3 737 52.1
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.9e-213 746.5 762 51.6
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 2.5e-213 746.1 739 52.2
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.5e-213 746.1 778 51.3
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 4.2e-213 745.3 714 53.4
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.2e-213 745.3 726 52.6
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 4.2e-213 745.3 745 51.8
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 5.5e-213 745.0 730 52.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.2e-212 743.8 732 52.3
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 2.7e-212 742.7 732 52.5
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 6.0e-212 741.5 750 52.7
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.8e-211 740.0 723 52.7
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.3e-211 739.6 735 52.1
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.1e-211 738.4 717 51.7
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 5.1e-211 738.4 735 51.8
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 6.7e-211 738.0 719 54.4
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.5e-210 736.1 722 53.0
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.5e-210 736.1 744 51.6
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 5.7e-210 734.9 717 52.7
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 2.8e-209 732.6 757 51.1
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.8e-209 732.6 721 52.7
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.8e-209 731.9 724 51.9
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 3.1e-208 729.2 741 52.0
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 9.0e-208 727.6 731 51.8
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.0e-207 726.5 715 52.0
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 3.4e-207 725.7 759 50.9
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 3.4e-207 725.7 731 51.2
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 6.5e-206 721.5 755 51.0
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.1e-205 720.7 717 51.7
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.9e-205 719.9 724 52.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.5e-205 719.5 722 51.7
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 3.2e-205 719.2 722 51.4
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 7.1e-205 718.0 750 51.5
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 9.3e-205 717.6 755 50.9
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.6e-204 716.8 721 51.7
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.0e-203 714.1 711 51.9
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.3e-203 713.8 754 50.1
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 2.3e-203 713.0 745 50.2
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 2.5e-202 709.5 753 50.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.8e-201 706.1 708 51.3
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 3.7e-201 705.7 739 50.7
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.3e-201 704.9 759 49.9
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.4e-200 703.7 785 48.5
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.2e-199 700.7 744 49.9
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.7e-198 696.8 740 50.1
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.2e-196 690.6 678 51.8
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 4.6e-196 688.7 767 49.8
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 3.9e-195 685.6 710 50.3
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 7.4e-194 681.4 757 48.7
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.7e-193 680.2 710 52.1
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 2.8e-193 679.5 714 50.0
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.4e-192 677.2 762 48.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.5e-191 673.7 713 49.1
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 5.9e-191 671.8 667 52.5
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 4.2e-189 665.6 715 48.0
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 4.2e-189 665.6 714 49.6
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.2e-189 665.6 799 46.2
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 9.4e-189 664.5 713 49.1
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 2.7e-188 662.9 713 48.7
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.4e-187 660.6 706 48.7
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 3.5e-183 646.0 725 48.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 7.2e-181 638.3 713 48.2
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 7.0e-176 621.7 714 47.2
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 5.9e-175 618.6 744 45.0
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.9e-174 616.3 714 47.1
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 1.5e-173 614.0 710 46.9
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.0e-171 607.8 721 47.2
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 4.0e-171 605.9 732 42.8
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 5.2e-163 578.9 819 41.0
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 1.4e-160 570.9 910 39.5
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.6e-158 561.6 419 63.2
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.8e-155 552.0 619 47.3
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 5.7e-154 548.9 726 43.4
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 5.7e-154 548.9 726 43.4
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 5.7e-154 548.9 726 43.4
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 2.4e-152 543.5 700 43.1
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 5.9e-151 538.9 608 49.2
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.6e-148 530.8 554 51.4
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 8.9e-147 525.0 684 43.3
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.1e-144 518.1 385 62.1
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 9.2e-144 515.0 673 42.6
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.1e-140 503.8 581 48.0
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.0e-134 483.4 425 54.6
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 6.6e-126 455.7 601 45.3
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 1.5e-114 417.9 516 46.5
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.6e-111 407.9 569 42.2
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.8e-105 386.7 489 46.6
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 4.9e-105 386.3 498 46.2
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 6.5e-97 359.4 248 62.5
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 3.8e-81 307.0 486 40.5
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 2.3e-62 244.6 182 56.0
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.0e-62 244.2 341 39.3
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 2.7e-50 204.5 209 53.1
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 6.1e-47 193.4 165 58.8
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 8.8e-46 189.5 150 54.7
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.2e-42 179.1 123 67.5
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.2e-42 179.1 156 50.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 7.8e-42 176.4 130 59.2
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 6.1e-39 166.8 130 57.7
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.8e-35 155.2 131 50.4
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 2.7e-34 151.4 99 70.7
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 3.5e-34 151.0 453 28.3
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 6.2e-31 140.2 345 31.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-30 138.3 152 45.4
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.2e-30 137.1 114 59.6
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.0e-25 122.9 86 65.1
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 2.5e-24 118.2 533 22.7
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.7e-23 114.0 74 68.9
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 1.6e-18 99.0 319 28.2
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 6.0e-18 97.1 150 35.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.0e-17 96.3 83 55.4
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 1.3e-17 95.9 89 55.1
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.3e-17 95.1 86 45.3
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.3e-17 95.1 86 45.3
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.5e-10 71.2 47 66.0
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 1.1e-08 66.2 80 47.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-08 64.7 58 50.0


User provided reference genes

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