Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.6e-84 315.5 170 100.0
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 1.8e-53 213.0 131 80.2
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 3.7e-43 178.7 126 67.5
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 4.9e-43 178.3 119 72.3
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 1.1e-42 177.2 120 69.2
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 1.9e-42 176.4 120 69.2
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 3.2e-42 175.6 118 70.3
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 3.2e-42 175.6 118 70.3
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 3.2e-42 175.6 118 70.3
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 2.0e-41 172.9 118 68.6
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 2.0e-41 172.9 118 68.6
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 3.5e-41 172.2 121 65.3
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 7.8e-41 171.0 119 68.1
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 1.0e-40 170.6 119 68.1
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 1.3e-40 170.2 119 68.9
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 2.3e-40 169.5 118 68.6
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 3.9e-40 168.7 140 58.6
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 5.0e-40 168.3 119 68.1
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 5.0e-40 168.3 121 65.3
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 5.0e-40 168.3 118 66.1
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 5.0e-40 168.3 121 66.1
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 6.6e-40 167.9 119 66.4
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 6.6e-40 167.9 118 66.9
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 8.6e-40 167.5 119 68.1
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 1.5e-39 166.8 131 62.6
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.5e-39 166.8 119 66.4
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.9e-39 166.4 118 66.9
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.9e-39 166.4 118 66.9
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 1.9e-39 166.4 129 60.5
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 3.3e-39 165.6 121 65.3
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 3.3e-39 165.6 118 65.3
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 4.3e-39 165.2 118 67.8
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 4.3e-39 165.2 121 64.5
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 7.3e-39 164.5 121 65.3
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 7.3e-39 164.5 127 61.4
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 9.5e-39 164.1 120 63.3
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 1.2e-38 163.7 120 65.8
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 1.6e-38 163.3 121 62.8
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 1.6e-38 163.3 119 66.4
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 2.1e-38 162.9 121 62.8
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 2.8e-38 162.5 127 59.8
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 2.8e-38 162.5 118 65.3
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 3.6e-38 162.2 121 63.6
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 3.6e-38 162.2 127 62.2
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 4.7e-38 161.8 137 59.1
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 8.1e-38 161.0 119 64.7
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 8.1e-38 161.0 118 64.4
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 1.1e-37 160.6 131 59.5
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 1.4e-37 160.2 113 68.1
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 1.4e-37 160.2 118 66.9
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 1.8e-37 159.8 116 65.5
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 2.3e-37 159.5 120 60.0
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 4.0e-37 158.7 119 65.5
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 5.2e-37 158.3 119 61.3
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 5.2e-37 158.3 120 62.5
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 6.8e-37 157.9 118 63.6
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.5e-36 156.8 135 59.3
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 5.8e-36 154.8 127 59.8
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 5.8e-36 154.8 127 59.8
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 5.8e-36 154.8 121 60.3
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 5.8e-36 154.8 119 62.2
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 5.8e-36 154.8 118 63.6
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 5.8e-36 154.8 116 63.8
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 7.5e-36 154.5 113 65.5
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 7.5e-36 154.5 118 63.6
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 1.3e-35 153.7 113 63.7
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 1.3e-35 153.7 121 60.3
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 1.7e-35 153.3 121 58.7
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 1.7e-35 153.3 121 58.7
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 1.7e-35 153.3 121 58.7
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 1.7e-35 153.3 127 59.1
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 1.7e-35 153.3 120 60.0
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.7e-35 153.3 104 69.2
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 1.7e-35 153.3 130 56.9
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 2.2e-35 152.9 127 59.1
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 2.2e-35 152.9 125 61.6
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 2.9e-35 152.5 121 61.2
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 2.9e-35 152.5 119 63.9
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 2.9e-35 152.5 121 58.7
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 3.7e-35 152.1 119 61.3
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 4.9e-35 151.8 127 58.3
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 6.4e-35 151.4 120 59.2
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 6.4e-35 151.4 119 62.2
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 6.4e-35 151.4 105 68.6
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 8.3e-35 151.0 139 56.8
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 1.1e-34 150.6 117 62.4
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 1.9e-34 149.8 121 57.9
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 3.2e-34 149.1 112 65.2
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 3.2e-34 149.1 121 57.9
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 3.2e-34 149.1 121 57.9
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 3.2e-34 149.1 121 57.9
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 2.1e-33 146.4 105 67.6
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 3.5e-33 145.6 147 54.4
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 1.3e-32 143.7 101 66.3
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.7e-32 143.3 105 65.7
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 5.1e-32 141.7 118 58.5
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.5e-31 140.2 141 52.5
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 2.5e-31 139.4 114 57.0
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 5.6e-31 138.3 128 54.7
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 7.3e-31 137.9 119 60.5
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 3.6e-30 135.6 120 59.2
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 3.6e-30 135.6 139 51.8
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 6.2e-30 134.8 130 55.4
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 4.0e-29 132.1 110 55.5
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.2e-28 130.6 118 55.1
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 3.4e-28 129.0 127 49.6
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 4.4e-28 128.6 110 54.5
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 5.8e-28 128.3 70 92.9
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 9.9e-28 127.5 92 68.5
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 9.9e-28 127.5 101 59.4
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 1.1e-26 124.0 105 59.0
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 9.2e-26 120.9 107 57.0
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 3.5e-25 119.0 210 35.7
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 5.1e-24 115.2 88 63.6
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 8.6e-24 114.4 117 53.0
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 1.1e-23 114.0 81 67.9
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 7.3e-23 111.3 122 46.7
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 8.9e-21 104.4 68 69.1
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 8.9e-21 104.4 74 66.2
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 2.9e-19 99.4 80 60.0
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 8.4e-19 97.8 69 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 2.7e-17 92.8 81 53.1
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 1.0e-16 90.9 117 35.9
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 9.6e-15 84.3 128 40.6
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 4.0e-13 79.0 61 62.3
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 4.0e-13 79.0 95 45.3
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 4.6e-09 65.5 45 66.7
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 5.1e-08 62.0 64 42.2


User provided reference genes

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