Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.5e-177 624.0 330 100.0
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.4e-107 392.9 320 68.8
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.8e-65 253.8 248 49.2
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.7e-63 247.3 293 45.7
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.7e-63 247.3 203 68.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 8.2e-63 245.0 255 47.5
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.8e-62 243.8 320 43.1
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.2e-61 241.1 257 47.9
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.6e-61 240.7 263 47.9
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.6e-61 240.7 272 47.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.6e-61 240.7 325 43.4
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.0e-61 240.4 328 42.7
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.5e-61 239.2 262 47.3
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.5e-61 239.2 285 45.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.0e-60 238.0 283 45.2
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.3e-60 237.7 260 47.3
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.3e-60 237.7 260 46.5
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.2e-60 236.9 261 45.6
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 5.0e-60 235.7 260 44.6
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 6.5e-60 235.3 261 46.0
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 6.5e-60 235.3 260 46.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 8.5e-60 235.0 259 44.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-59 234.6 317 42.6
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.1e-59 234.6 256 45.7
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.5e-59 234.2 262 45.8
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.9e-59 233.8 257 46.3
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 2.5e-59 233.4 327 42.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.2e-59 233.0 260 44.6
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.1e-58 230.3 260 45.8
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 3.6e-58 229.6 260 45.8
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.7e-58 229.2 257 45.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 4.7e-58 229.2 285 41.8
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 4.7e-58 229.2 260 46.9
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 8.0e-58 228.4 260 45.0
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.4e-57 227.6 260 44.6
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.8e-57 227.3 258 45.3
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.0e-57 226.5 262 46.9
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 4.0e-57 226.1 261 46.4
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 5.2e-57 225.7 264 45.5
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 6.8e-57 225.3 260 44.6
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.8e-57 224.9 257 45.5
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.8e-57 224.9 257 45.5
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.2e-56 224.6 262 42.4
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.0e-56 223.8 291 43.0
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.6e-56 223.4 279 42.7
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.6e-56 223.4 317 42.3
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.6e-56 223.4 250 45.2
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.4e-56 223.0 266 46.2
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.4e-56 222.6 253 45.5
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 7.5e-56 221.9 289 40.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 9.8e-56 221.5 298 42.3
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.7e-55 220.7 262 42.4
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.2e-55 220.3 300 41.3
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.2e-55 220.3 263 44.5
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.7e-55 219.5 260 45.8
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.8e-55 219.2 260 43.1
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 6.3e-55 218.8 266 45.1
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.3e-55 218.8 267 45.3
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 6.3e-55 218.8 291 40.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 8.3e-55 218.4 299 42.5
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.1e-54 218.0 265 45.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.1e-54 218.0 268 45.9
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.1e-54 218.0 260 43.5
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.4e-54 217.6 246 47.2
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.8e-54 217.2 303 39.9
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.4e-54 216.9 262 44.7
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.4e-54 215.7 282 43.3
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 5.4e-54 215.7 262 43.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 5.4e-54 215.7 306 39.2
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 5.4e-54 215.7 258 43.0
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 5.4e-54 215.7 263 45.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 9.1e-54 214.9 268 44.8
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.6e-53 214.2 258 42.2
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 2.0e-53 213.8 281 42.3
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.0e-53 213.8 262 42.7
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 2.7e-53 213.4 273 44.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.7e-53 213.4 279 41.6
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.7e-53 213.4 262 42.7
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 4.5e-53 212.6 319 38.9
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.9e-53 212.2 260 42.3
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.0e-52 211.5 269 44.2
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.7e-52 210.7 264 42.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.2e-52 210.3 331 39.0
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.2e-52 210.3 262 44.3
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.2e-52 210.3 281 41.6
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.2e-52 210.3 260 43.5
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.2e-52 210.3 262 43.9
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.2e-52 210.3 262 44.3
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 3.8e-52 209.5 250 43.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 3.8e-52 209.5 250 43.6
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.8e-52 209.5 303 39.3
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 5.0e-52 209.1 265 44.2
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 6.5e-52 208.8 265 43.4
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.1e-51 208.0 266 43.6
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.1e-51 208.0 262 43.1
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.1e-51 208.0 308 39.6
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.9e-51 207.2 324 40.7
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.9e-51 207.2 260 43.1
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 2.5e-51 206.8 262 43.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.5e-51 206.8 262 43.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 3.2e-51 206.5 248 44.0
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 5.5e-51 205.7 253 43.1
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.1e-50 203.8 262 39.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.7e-50 203.4 260 40.8
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 4.7e-50 202.6 258 39.9
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.7e-50 202.6 260 43.5
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 6.1e-50 202.2 197 50.8
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 6.1e-50 202.2 313 40.6
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.4e-49 201.1 315 39.4
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.3e-49 200.3 240 42.5
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 3.0e-49 199.9 261 41.4
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.0e-49 199.9 296 38.9
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.2e-48 198.0 206 52.9
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.5e-48 197.6 303 37.3
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 3.4e-48 196.4 262 39.7
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 4.4e-48 196.1 303 39.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.7e-48 195.7 261 42.5
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.3e-47 194.5 258 39.9
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.3e-47 194.5 290 37.9
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.9e-47 192.6 202 47.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.9e-47 192.6 202 47.0
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 8.3e-47 191.8 261 41.4
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 4.1e-46 189.5 254 38.6
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 7.0e-46 188.7 322 36.3
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.0e-44 182.6 247 41.3
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.6e-42 177.6 280 39.3
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.6e-42 177.6 203 41.4
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.1e-42 177.2 183 50.3
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.1e-42 177.2 257 38.5
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.7e-42 176.0 244 41.0
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.4e-41 174.5 172 47.7
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.6e-40 170.2 250 40.0
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.4e-38 163.7 258 36.8
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.2e-38 163.3 243 39.9
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.1e-38 162.9 255 36.5
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 3.1e-33 146.7 175 41.7
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 5.0e-28 129.4 161 42.9
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.6e-27 125.9 259 32.4
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.1e-22 111.7 120 43.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 6.6e-20 102.4 95 49.5
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.1e-14 83.2 127 34.6
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.3e-12 78.2 90 44.4
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 2.5e-11 73.9 201 28.9
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 3.1e-09 67.0 288 24.0
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 3.1e-09 67.0 95 33.7
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 9.9e-08 62.0 331 23.3


User provided reference genes

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