Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.6e-89 332.0 170 100.0
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.5e-64 247.3 203 68.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 7.3e-47 191.0 203 52.2
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.4e-26 122.9 200 34.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.6e-25 118.6 200 34.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 6.6e-24 114.8 202 34.7
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 8.6e-24 114.4 209 34.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.5e-23 113.6 208 32.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.9e-23 113.2 209 34.0
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.3e-23 112.1 202 33.2
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.3e-23 112.1 208 31.7
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.6e-23 111.7 208 33.7
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 5.6e-23 111.7 205 31.7
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 9.6e-23 110.9 208 34.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.2e-22 110.5 208 34.1
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-22 110.2 203 31.5
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.6e-22 110.2 202 34.2
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.1e-22 109.8 208 34.1
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.8e-22 109.4 203 31.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 3.6e-22 109.0 205 30.7
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.6e-22 109.0 208 32.2
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 6.2e-22 108.2 202 33.2
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 6.2e-22 108.2 202 32.7
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 6.2e-22 108.2 202 32.7
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 6.2e-22 108.2 206 32.0
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.1e-21 107.5 205 30.7
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.1e-21 107.5 206 33.0
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.1e-21 107.5 203 32.5
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.4e-21 107.1 207 31.4
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.8e-21 106.7 208 32.7
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.4e-21 106.3 206 34.5
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.0e-21 105.5 207 32.4
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 6.9e-21 104.8 165 37.0
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 6.9e-21 104.8 207 31.4
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 6.9e-21 104.8 202 31.2
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 8.9e-21 104.4 201 31.8
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.2e-20 104.0 204 31.4
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.5e-20 103.6 198 32.8
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.5e-20 103.6 202 30.7
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.0e-20 103.2 205 28.8
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.6e-20 102.8 207 30.9
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 3.4e-20 102.4 197 34.0
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.4e-20 102.4 207 32.4
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.4e-20 102.4 207 32.4
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 4.4e-20 102.1 205 32.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.8e-20 101.7 218 33.5
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.6e-20 101.3 201 31.8
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.6e-20 101.3 205 29.8
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 9.9e-20 100.9 199 31.2
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 9.9e-20 100.9 202 32.7
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 9.9e-20 100.9 202 32.7
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.3e-19 100.5 202 31.2
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.7e-19 100.1 202 33.2
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.7e-19 100.1 203 30.0
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 2.2e-19 99.8 203 32.0
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.2e-19 99.8 206 28.6
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.9e-19 99.4 222 31.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.9e-19 99.4 207 30.9
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.9e-19 99.4 201 31.8
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.8e-19 99.0 201 30.8
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.8e-19 99.0 204 31.9
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 3.8e-19 99.0 206 31.1
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.8e-19 99.0 207 30.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 4.9e-19 98.6 203 31.0
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 8.4e-19 97.8 199 31.7
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.4e-18 97.1 203 32.0
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.9e-18 96.7 203 31.5
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.2e-18 95.9 195 31.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.2e-18 95.9 200 27.5
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.2e-18 95.9 204 29.4
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 3.2e-18 95.9 203 30.5
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 4.2e-18 95.5 200 31.0
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.4e-18 95.1 208 28.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 7.1e-18 94.7 206 31.6
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 9.3e-18 94.4 206 32.0
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 9.3e-18 94.4 203 30.5
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 9.3e-18 94.4 205 27.8
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.2e-17 94.0 209 32.5
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-17 94.0 211 28.4
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.2e-17 94.0 203 31.5
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.2e-17 94.0 205 27.8
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.6e-17 93.6 208 28.8
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 2.1e-17 93.2 203 29.1
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.1e-17 93.2 205 27.8
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.7e-17 92.8 206 30.1
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.7e-17 92.8 204 30.4
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 2.7e-17 92.8 204 30.4
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.0e-17 91.7 208 31.2
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 6.0e-17 91.7 205 27.3
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 7.8e-17 91.3 206 31.1
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 7.8e-17 91.3 204 27.9
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 7.8e-17 91.3 209 28.2
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 7.8e-17 91.3 205 27.3
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.0e-16 90.9 205 31.2
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.0e-16 90.9 210 29.5
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.3e-16 90.5 207 30.9
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.7e-16 90.1 205 27.8
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.7e-16 90.1 207 30.9
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.3e-16 89.7 206 29.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.3e-16 89.7 206 29.6
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.0e-16 89.4 203 28.1
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 5.1e-16 88.6 201 30.3
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 8.7e-16 87.8 205 30.7
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 8.7e-16 87.8 206 29.6
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.1e-15 87.4 206 30.6
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.5e-15 87.0 208 29.8
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.5e-15 87.0 201 28.9
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.9e-15 86.7 203 27.6
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.9e-15 86.7 201 27.4
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 2.5e-15 86.3 210 30.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 2.5e-15 86.3 206 30.1
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.3e-15 85.9 207 29.5
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.3e-15 85.5 203 28.1
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.6e-15 85.1 208 30.3
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.3e-15 84.7 97 38.1
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.3e-14 84.0 203 27.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.3e-14 84.0 206 27.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.8e-14 82.0 208 29.8
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.2e-14 81.6 204 27.5
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 8.1e-14 81.3 96 40.6
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.8e-13 80.1 198 25.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.4e-13 79.7 103 39.8
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.1e-13 79.3 93 38.7
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 4.0e-13 79.0 90 44.4
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 6.9e-13 78.2 93 37.6
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 9.0e-13 77.8 191 26.7
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 7.6e-12 74.7 93 38.7
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.6e-12 74.7 92 39.1
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-11 73.9 203 27.1
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.7e-11 73.6 94 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.8e-11 72.4 88 39.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.8e-11 72.4 194 25.8
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.2e-09 67.4 95 33.7
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.3e-08 63.2 79 39.2
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 3.0e-08 62.8 198 24.2
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.1e-08 62.0 185 25.4
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 8.1e-06 54.7 49 53.1


User provided reference genes

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