Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0384600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 0.0e+00 1133.6 554 100.0
Os04g0479800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.3e-68 265.0 516 38.8
Os06g0139000 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.9e-68 263.8 516 38.2
Os09g0502600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.9e-67 261.2 518 36.3
Os03g0202500 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 7.1e-67 259.2 547 36.9
Os05g0538250 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 7.8e-66 255.8 511 36.6
Os05g0571700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.3e-65 255.0 501 38.5
Os09g0502900 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 3.3e-64 250.4 497 36.6
Os02g0105800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 9.6e-64 248.8 503 37.0
Os09g0325220 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.8e-62 244.6 504 35.3
Zm00001eb143720 Zea mays HOM05D008868 ORTHO05D011164 3.1e-62 243.8 506 36.4
Os06g0142100 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 4.0e-62 243.4 546 35.2
Os03g0217200 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 6.9e-62 242.7 535 35.9
Os05g0532300 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.2e-61 241.9 508 35.8
Os01g0946850 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.3e-55 221.9 430 35.8
Zm00001eb276920 Zea mays HOM05D008868 ORTHO05D011164 2.1e-55 221.1 505 32.7
Os06g0138700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.7e-52 211.5 474 36.1
Os11g0526800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.6e-47 194.9 411 36.5
Os05g0531800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 3.4e-45 187.2 347 37.8
Os05g0535200 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.1e-43 182.2 372 35.8
Os09g0506700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 7.1e-43 179.5 485 33.0
Os09g0500100 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 3.0e-41 174.1 349 34.1
Os05g0575400 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 5.1e-33 146.7 329 33.1
Os04g0626600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.3e-31 142.1 250 34.4
Os02g0729350 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 3.4e-29 134.0 253 39.5
Os09g0503700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 5.9e-29 133.3 232 39.7
Os11g0532600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D000368 1.8e-22 111.7 496 27.8
Os09g0506450 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 3.1e-22 110.9 332 29.5
Os09g0510900 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.2e-20 104.8 205 34.1
Os01g0774200 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 9.4e-19 99.4 230 36.1
Os09g0502800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.2e-18 99.0 161 36.6
Zm00001eb143790 Zea mays HOM05D008868 ORTHO05D011164 1.6e-18 98.6 185 38.4
Aqoxy1G01400 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 2.3e-17 94.7 501 25.1
Os03g0218200 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 8.8e-17 92.8 190 36.8
Os04g0479500 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.5e-16 92.0 231 33.8
TAR633G2603 Trochodendron aralioides HOM05D000576 ORTHO05D000368 9.7e-16 89.4 303 28.4
Os09g0562400 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.3e-15 89.0 170 37.6
Os04g0626700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.7e-15 88.6 133 36.1
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.8e-15 87.0 498 24.9
Rhsim02G0214100 Rhododendron simsii HOM05D000576 ORTHO05D000368 6.3e-15 86.7 323 26.9
Os07g0161500 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 3.1e-14 84.3 438 25.3
Sabra17G0081300 Salix brachista HOM05D000576 ORTHO05D000368 4.1e-14 84.0 516 24.2
Ciclev10013373m.g Citrus clementina HOM05D000576 ORTHO05D000368 9.1e-14 82.8 351 24.2
Os07g0158900 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 1.2e-13 82.4 461 25.8
Aqoxy5G02891 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 1.5e-13 82.0 370 25.7
TAR629G0101 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.5e-13 82.0 507 24.1
Os11g0527300 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 3.5e-13 80.9 208 35.1
Os07g0163200 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 4.5e-13 80.5 295 29.5
GSVIVG01017697001 Vitis vinifera HOM05D000576 ORTHO05D000368 5.9e-13 80.1 453 24.7
CSS0001211 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 7.7e-13 79.7 278 25.5
Cc03_g00060 Coffea canephora HOM05D000576 ORTHO05D000368 7.7e-13 79.7 446 25.3
vmacro02138 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 1.0e-12 79.3 463 24.6
vmacro23074 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 1.0e-12 79.3 463 24.6
QL04p018320 Quercus lobata HOM05D007484 ORTHO05D008290 1.3e-12 79.0 383 25.1
Migut.J00163 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.8e-12 77.4 510 23.1
Cc03_g13650 Coffea canephora HOM05D000576 ORTHO05D000368 5.0e-12 77.0 500 25.0
FvH4_1g04271 Fragaria vesca HOM05D000576 ORTHO05D000368 8.5e-12 76.3 511 22.9
Oeu048256.1 Olea europaea HOM05D000576 ORTHO05D000368 8.5e-12 76.3 497 24.1
Thecc.08G187100 Theobroma cacao HOM05D000576 ORTHO05D000368 1.5e-11 75.5 523 22.2
TAR371G0526 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.5e-11 75.5 454 23.6
Lj9A559T48 Lonicera japonica HOM05D000576 ORTHO05D000368 1.9e-11 75.1 458 23.6
QL10p005093 Quercus lobata HOM05D000576 ORTHO05D000368 1.9e-11 75.1 456 24.1
Os02g0105600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.5e-11 74.7 96 47.9
CSS0016406 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 3.2e-11 74.3 278 24.8
Prupe.7G247200 Prunus persica HOM05D000576 ORTHO05D000368 3.2e-11 74.3 263 24.7
CSS0005465 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 7.2e-11 73.2 271 26.2
MD02G1028400 Malus domestica HOM05D000005 ORTHO05D000368 7.2e-11 73.2 511 23.9
Migut.J00208 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.6e-10 72.0 502 23.5
TAR365G0708 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.7e-10 71.2 466 22.7
Migut.F01284 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.6e-10 70.9 415 23.6
Migut.J00162 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.7e-10 70.5 396 23.7
Migut.J00790 Erythranthe guttata HOM05D000576 ORTHO05D000368 6.1e-10 70.1 525 22.5
QL10p004673 Quercus lobata HOM05D000576 ORTHO05D000368 6.1e-10 70.1 287 26.5
RcHm_v2.0_Chr3g0449591 Rosa chinensis HOM05D000576 ORTHO05D000368 8.0e-10 69.7 495 22.0
MD14G1064800 Malus domestica HOM05D000576 ORTHO05D000368 1.0e-09 69.3 500 22.0
Rhsim13G0170100 Rhododendron simsii HOM05D007484 ORTHO05D008290 1.0e-09 69.3 406 22.7
Cc02_g06350 Coffea canephora HOM05D000576 ORTHO05D000368 1.4e-09 68.9 386 25.9
QL10p004694 Quercus lobata HOM05D000576 ORTHO05D000368 1.4e-09 68.9 283 26.1
Cc10_g03840 Coffea canephora HOM05D000576 ORTHO05D000368 1.8e-09 68.6 534 21.5
Os05g0535300 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.3e-09 68.2 62 51.6
COL.COLO4_13160 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.0e-09 67.8 229 27.9
COL.COLO4_23029 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.0e-09 67.8 308 27.3
DCAR_026935 Daucus carota HOM05D000576 ORTHO05D000368 3.0e-09 67.8 453 24.1
Duzib150G1449 Durio zibethinus HOM05D000576 ORTHO05D000368 4.0e-09 67.4 511 22.9
MBI03_g20843_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 4.0e-09 67.4 387 24.5
Os01g0553400 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 4.0e-09 67.4 374 26.5
Eucgr.D00711 Eucalyptus grandis HOM05D007484 ORTHO05D008290 5.2e-09 67.0 391 23.0
QL10p004689 Quercus lobata HOM05D000576 ORTHO05D000368 5.2e-09 67.0 287 25.8
Hund02870 Selenicereus undatus HOM05D000576 ORTHO05D000368 5.2e-09 67.0 442 22.9
DCAR_026934 Daucus carota HOM05D000576 ORTHO05D000368 6.7e-09 66.6 494 23.5
Os04g0675800 Oryza sativa ssp. japonica HOM05D001982 ORTHO05D008035 6.7e-09 66.6 392 24.0
Rhsim13G0226200 Rhododendron simsii HOM05D000576 ORTHO05D000368 8.8e-09 66.2 378 23.5
RcHm_v2.0_Chr2g0087591 Rosa chinensis HOM05D000576 ORTHO05D000368 8.8e-09 66.2 297 25.6
Aqoxy6G01742 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 1.1e-08 65.9 277 26.4
Aqoxy6G01747 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 1.1e-08 65.9 277 26.4
COL.COLO4_23025 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.1e-08 65.9 306 27.1
MELO3C026220.2 Cucumis melo HOM05D000576 ORTHO05D000368 1.5e-08 65.5 382 23.3
Prupe.4G036700 Prunus persica HOM05D007484 ORTHO05D008290 1.5e-08 65.5 470 22.8
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 1.5e-08 65.5 299 27.1
EL10Ac1g02073 Beta vulgaris HOM05D000576 ORTHO05D000368 2.0e-08 65.1 278 27.7
Migut.G00964 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.0e-08 65.1 504 21.6
TWI32G0666 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.0e-08 65.1 392 24.5
DCAR_026937 Daucus carota HOM05D000576 ORTHO05D000368 3.3e-08 64.3 453 23.8
DCAR_026939 Daucus carota HOM05D000576 ORTHO05D000368 3.3e-08 64.3 495 23.0
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 3.3e-08 64.3 497 22.3
TWI63G0443 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 3.3e-08 64.3 451 23.9
ATR0820G132 Amborella trichopoda HOM05D000312 ORTHO05D000221 4.4e-08 63.9 255 25.1
Duzib192G0019 Durio zibethinus HOM05D007484 ORTHO05D008290 5.7e-08 63.5 413 20.8
Migut.I01059 Erythranthe guttata HOM05D000576 ORTHO05D000368 5.7e-08 63.5 276 24.6
FAN19G2457 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.7e-08 63.5 484 23.6
RcHm_v2.0_Chr3g0471621 Rosa chinensis HOM05D000576 ORTHO05D000368 5.7e-08 63.5 270 23.3
Migut.I01047 Erythranthe guttata HOM05D000576 ORTHO05D000368 7.5e-08 63.2 414 23.9
RcHm_v2.0_Chr3g0480841 Rosa chinensis HOM05D000576 ORTHO05D000368 7.5e-08 63.2 474 22.6
TWI18G0117 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 7.5e-08 63.2 435 21.4
TAR626G0438 Trochodendron aralioides HOM05D007484 ORTHO05D008290 7.5e-08 63.2 230 27.4
Cc10_g03770 Coffea canephora HOM05D000576 ORTHO05D000368 9.7e-08 62.8 516 22.3
arahy.Tifrunner.gnm1.ann1.Q9TM1C Arachis hypogaea HOM05D000862 ORTHO05D000943 1.3e-07 62.4 267 21.3
SGA_v2.0_scaffold342G49404 Striga asiatica HOM05D000576 ORTHO05D000368 1.3e-07 62.4 513 24.4
Migut.N01947 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.7e-07 62.0 277 25.6
FvH4_1g04280 Fragaria vesca HOM05D000576 ORTHO05D000368 1.7e-07 62.0 506 22.5
Lj9A566T51 Lonicera japonica HOM05D000576 ORTHO05D000368 1.7e-07 62.0 375 22.9
TWI18G0091 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.7e-07 62.0 307 25.4
CSS0031751 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 2.2e-07 61.6 438 21.7
Ciclev10008333m.g Citrus clementina HOM05D000576 ORTHO05D000368 2.2e-07 61.6 289 23.2
THA.LOC104809547 Tarenaya hassleriana HOM05D007484 ORTHO05D008290 2.2e-07 61.6 235 26.8
Solyc02g079120.1 Solanum lycopersicum HOM05D007484 ORTHO05D008290 2.8e-07 61.2 382 21.7
RcHm_v2.0_Chr2g0105201 Rosa chinensis HOM05D000576 ORTHO05D000368 3.7e-07 60.8 493 20.9
ClCG06G017710 Citrullus lanatus HOM05D000576 ORTHO05D000368 4.8e-07 60.5 388 22.4
CsaV3_1G000750 Cucumis sativus L. HOM05D000576 ORTHO05D000368 4.8e-07 60.5 383 23.8
Migut.J00217 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.8e-07 60.5 271 23.6
Prupe.5G181600 Prunus persica HOM05D000576 ORTHO05D000368 4.8e-07 60.5 360 24.7
RcHm_v2.0_Chr3g0449531 Rosa chinensis HOM05D000576 ORTHO05D000368 4.8e-07 60.5 357 24.4
RcHm_v2.0_Chr2g0160721 Rosa chinensis HOM05D008065 ORTHO05D010197 6.3e-07 60.1 382 25.1
Thecc.03G058200 Theobroma cacao HOM05D000576 ORTHO05D000368 6.3e-07 60.1 249 26.5
Cfa000354 Carpinus fangiana HOM05D007484 ORTHO05D008290 8.2e-07 59.7 399 22.1
Ciclev10015410m.g Citrus clementina HOM05D000576 ORTHO05D000368 8.2e-07 59.7 380 22.6
Migut.G00965 Erythranthe guttata HOM05D000576 ORTHO05D000368 8.2e-07 59.7 465 22.4
Migut.I00860 Erythranthe guttata HOM05D000576 ORTHO05D000368 8.2e-07 59.7 456 23.9
Lj5A96T52 Lonicera japonica HOM05D000576 ORTHO05D000368 8.2e-07 59.7 309 24.6
SGA_v2.0_scaffold225G42991 Striga asiatica HOM05D000576 ORTHO05D000368 1.1e-06 59.3 342 24.9
SGA_v2.0_scaffold225G43012 Striga asiatica HOM05D000576 ORTHO05D000368 1.1e-06 59.3 502 23.1
Lj5A369G34 Lonicera japonica HOM05D000576 ORTHO05D000368 1.4e-06 58.9 457 21.2
Lj9A565T43 Lonicera japonica HOM05D000576 ORTHO05D000368 1.4e-06 58.9 375 22.4
MBI02_g37280_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D010197 1.4e-06 58.9 272 24.6
BcaNung03627 Brassica carinata HOM05D002909 ORTHO05D000493 1.8e-06 58.5 248 24.6
Ciclev10008358m.g Citrus clementina HOM05D000576 ORTHO05D000368 1.8e-06 58.5 376 22.3
Migut.I01154 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.8e-06 58.5 463 21.8
FAN06G5009 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.8e-06 58.5 390 22.6
RcHm_v2.0_Chr2g0105211 Rosa chinensis HOM05D000576 ORTHO05D000368 1.8e-06 58.5 185 27.0
TWI18G0229 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.8e-06 58.5 422 22.7
TAR629G2683 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.8e-06 58.5 285 28.1
MD17G1089300 Malus domestica HOM05D008065 ORTHO05D010197 2.4e-06 58.2 388 22.7
Nitab4.5_0000099g0260 Nicotiana tabacum HOM05D000576 ORTHO05D000368 2.4e-06 58.2 496 23.4
arahy.Tifrunner.gnm1.ann1.WE7T8M Arachis hypogaea HOM05D000862 ORTHO05D000943 3.1e-06 57.8 267 21.3
Prupe.7G249000 Prunus persica HOM05D000576 ORTHO05D000368 3.1e-06 57.8 269 23.4
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 4.1e-06 57.4 301 25.6
Migut.I00397 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.1e-06 57.4 316 22.5
Migut.J00215 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.1e-06 57.4 508 21.5
MD09G1063900 Malus domestica HOM05D000576 ORTHO05D000368 4.1e-06 57.4 173 26.6
Aqoxy4G00512 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 5.3e-06 57.0 377 21.2
QL05p010063 Quercus lobata HOM05D001477 ORTHO05D001182 5.3e-06 57.0 269 24.5
RhsimUnG0214200 Rhododendron simsii HOM05D000576 ORTHO05D000368 5.3e-06 57.0 339 22.1
Haze_05669 Corylus avellana HOM05D000576 ORTHO05D000368 7.0e-06 56.6 275 26.2
Migut.I00042 Erythranthe guttata HOM05D000576 ORTHO05D000368 7.0e-06 56.6 195 27.2
Prupe.3G136800 Prunus persica HOM05D000576 ORTHO05D000368 7.0e-06 56.6 260 23.8
Rhsim01G0067400 Rhododendron simsii HOM05D000576 ORTHO05D000368 7.0e-06 56.6 411 22.1


User provided reference genes

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