Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 0.0e+00 1294.3 701 100.0
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 2.2e-291 1005.4 704 79.1
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 6.4e-214 748.0 749 57.0
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 6.6e-211 738.0 731 58.1
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 2.3e-208 729.6 731 57.3
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 2.3e-208 729.6 739 56.2
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 5.2e-208 728.4 731 55.8
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 6.8e-208 728.0 740 54.6
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 2.0e-207 726.5 731 58.0
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 2.0e-207 726.5 740 58.2
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 9.8e-207 724.2 734 57.5
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 1.3e-206 723.8 736 57.5
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 2.2e-206 723.0 733 56.6
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 4.9e-206 721.8 716 57.5
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 3.2e-205 719.2 723 56.2
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 9.2e-205 717.6 733 57.0
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 1.6e-204 716.8 730 57.8
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 2.1e-204 716.5 731 54.4
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 2.1e-204 716.5 730 55.6
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 2.7e-204 716.1 724 55.8
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.7e-204 716.1 692 58.1
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 6.0e-204 714.9 736 54.2
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 1.0e-203 714.1 721 56.9
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 1.3e-203 713.8 737 54.1
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.3e-203 713.8 692 57.8
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 1.7e-203 713.4 741 56.5
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 3.9e-203 712.2 731 55.3
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 1.5e-202 710.3 735 54.6
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 3.3e-202 709.1 728 55.6
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 1.2e-201 707.2 727 55.2
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 3.6e-201 705.7 734 57.2
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 8.1e-201 704.5 732 55.1
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 1.1e-200 704.1 731 56.6
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.8e-200 703.4 730 55.6
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.3e-200 703.0 731 53.8
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.3e-200 703.0 730 55.8
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 3.1e-200 702.6 740 56.8
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 5.2e-200 701.8 716 55.3
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 6.8e-200 701.4 730 55.8
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 6.8e-200 701.4 730 55.3
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 8.9e-200 701.0 730 53.6
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.2e-199 700.7 730 55.8
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 9.9e-199 697.6 734 54.0
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 9.9e-199 697.6 737 53.9
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 9.9e-199 697.6 732 53.0
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 2.9e-198 696.0 743 53.0
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 4.9e-198 695.3 729 54.3
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 4.9e-198 695.3 715 56.6
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 7.1e-197 691.4 710 56.9
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 1.2e-196 690.6 723 55.7
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.2e-196 690.6 723 54.4
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 3.9e-195 685.6 718 54.2
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 1.5e-194 683.7 710 55.2
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.5e-194 683.7 722 53.6
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 7.3e-194 681.4 735 53.1
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 9.5e-194 681.0 731 55.4
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 2.8e-193 679.5 719 54.7
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 4.7e-193 678.7 734 53.8
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 1.1e-192 677.6 723 54.8
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.1e-192 677.6 721 54.1
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.4e-192 676.4 727 54.7
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 3.1e-192 676.0 724 53.2
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 1.5e-191 673.7 725 56.1
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 5.8e-191 671.8 730 55.2
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 1.7e-190 670.2 729 54.2
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 2.2e-190 669.8 737 54.0
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 4.9e-190 668.7 728 52.6
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 4.9e-190 668.7 729 52.9
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 2.4e-189 666.4 727 54.1
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 4.2e-189 665.6 725 53.9
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 2.7e-188 662.9 720 53.6
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 1.0e-187 661.0 723 53.7
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 1.3e-187 660.6 726 51.5
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 2.3e-187 659.8 797 51.4
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 5.1e-187 658.7 719 54.2
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 2.8e-185 652.9 711 55.7
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 1.8e-184 650.2 711 53.3
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 2.4e-184 649.8 744 50.4
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 3.2e-181 639.4 735 52.0
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 7.1e-181 638.3 724 53.9
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 6.0e-180 635.2 733 51.6
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 6.0e-180 635.2 730 51.0
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 1.0e-179 634.4 724 51.1
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 3.9e-179 632.5 724 50.8
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 2.5e-178 629.8 724 50.7
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 2.5e-178 629.8 725 51.0
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 3.3e-178 629.4 647 56.1
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 3.6e-177 625.9 735 51.3
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 6.9e-176 621.7 725 50.2
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 9.0e-176 621.3 953 43.1
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 1.3e-174 617.5 773 48.8
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 1.7e-174 617.1 748 49.1
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 4.9e-174 615.5 736 50.1
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 2.9e-166 589.7 943 42.5
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 6.5e-158 562.0 554 57.2
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 8.4e-158 561.6 600 54.0
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.4e-157 560.8 625 53.3
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.3e-155 554.3 620 52.7
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.3e-147 526.9 574 52.4
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 5.7e-146 522.3 555 54.2
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 1.9e-141 507.3 600 53.0
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 9.4e-141 505.0 593 49.7
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 1.2e-135 488.0 707 44.0
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 5.2e-131 472.6 536 51.7
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 1.6e-119 434.5 775 38.8
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 8.5e-118 428.7 522 50.0
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 2.1e-116 424.1 794 36.8
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 8.9e-107 392.1 680 36.5
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 6.4e-89 332.8 307 59.3
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 1.2e-84 318.5 283 58.7
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 2.3e-83 314.3 404 47.5
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 6.0e-63 246.5 422 39.8
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 1.9e-56 224.9 466 38.2
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 1.4e-51 208.8 179 60.9
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 1.8e-51 208.4 187 56.7
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 2.5e-48 198.0 278 45.3
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 8.2e-44 183.0 267 42.7
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 2.5e-40 171.4 154 57.8
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 3.0e-38 164.5 163 60.1
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 5.1e-30 137.1 136 61.8
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 4.3e-29 134.0 137 59.9
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 3.7e-28 131.0 95 67.4
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 4.5e-26 124.0 137 58.4
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 7.7e-26 123.2 363 33.1
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 5.0e-25 120.6 107 63.6
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 3.2e-24 117.9 125 51.2
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 6.3e-20 103.6 109 49.5
MBI16_g22817_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 5.2e-06 57.4 35 80.0


User provided reference genes

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