Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 3.6e-58 228.0 114 100.0
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 1.0e-52 209.9 114 90.4
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 3.9e-52 208.0 114 89.5
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 8.0e-50 200.3 112 86.6
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 5.2e-49 197.6 112 84.8
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 1.5e-48 196.1 112 83.9
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.0e-48 195.7 110 86.4
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.0e-48 195.7 110 86.4
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 3.4e-48 194.9 112 83.0
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 3.4e-48 194.9 112 82.1
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 9.8e-48 193.4 110 84.5
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 1.3e-47 193.0 112 83.0
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 1.3e-47 193.0 112 82.1
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 1.7e-47 192.6 112 82.1
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 2.2e-47 192.2 111 83.8
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 2.2e-47 192.2 112 83.0
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 3.7e-47 191.4 112 80.4
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 4.9e-47 191.0 111 82.9
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 4.9e-47 191.0 112 81.2
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 4.9e-47 191.0 112 82.1
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 4.9e-47 191.0 112 81.2
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 6.4e-47 190.7 112 81.2
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 6.4e-47 190.7 112 81.2
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 6.4e-47 190.7 106 86.8
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 8.3e-47 190.3 111 82.9
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 8.3e-47 190.3 111 83.8
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 8.3e-47 190.3 111 82.9
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 8.3e-47 190.3 110 83.6
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 1.1e-46 189.9 111 82.9
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 1.1e-46 189.9 111 82.9
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 1.1e-46 189.9 111 82.9
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 1.1e-46 189.9 111 82.9
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 1.1e-46 189.9 112 82.1
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.4e-46 189.5 112 81.2
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.4e-46 189.5 112 81.2
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 1.4e-46 189.5 110 82.7
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 2.4e-46 188.7 110 81.8
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 3.2e-46 188.3 112 79.5
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 3.2e-46 188.3 112 79.5
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 3.2e-46 188.3 112 80.4
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 3.2e-46 188.3 112 80.4
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 3.2e-46 188.3 114 79.8
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 3.2e-46 188.3 112 80.4
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 4.1e-46 188.0 112 79.5
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 4.1e-46 188.0 114 78.9
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 4.1e-46 188.0 114 78.9
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 5.4e-46 187.6 112 81.2
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 5.4e-46 187.6 112 79.5
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 5.4e-46 187.6 111 82.0
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 5.4e-46 187.6 112 80.4
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 7.0e-46 187.2 111 81.1
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 7.0e-46 187.2 112 78.6
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 7.0e-46 187.2 112 80.4
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 9.2e-46 186.8 112 77.7
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 9.2e-46 186.8 110 80.9
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 9.2e-46 186.8 112 80.4
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 9.2e-46 186.8 112 78.6
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 9.2e-46 186.8 110 80.9
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 9.2e-46 186.8 112 78.6
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 1.2e-45 186.4 111 82.0
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.2e-45 186.4 111 80.2
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 1.2e-45 186.4 112 79.5
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 1.6e-45 186.0 110 80.0
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.6e-45 186.0 112 78.6
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 2.0e-45 185.7 112 79.5
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 2.7e-45 185.3 112 80.4
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 2.7e-45 185.3 110 80.0
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.7e-45 185.3 110 80.0
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 2.7e-45 185.3 112 79.5
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 4.6e-45 184.5 112 75.9
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 4.6e-45 184.5 112 79.5
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 4.6e-45 184.5 111 81.1
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 6.0e-45 184.1 112 80.4
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 6.0e-45 184.1 112 79.5
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 7.8e-45 183.7 112 79.5
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 7.8e-45 183.7 112 79.5
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 7.8e-45 183.7 112 79.5
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 7.8e-45 183.7 112 78.6
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.0e-44 183.3 112 77.7
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.0e-44 183.3 108 80.6
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 1.0e-44 183.3 112 77.7
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 2.3e-44 182.2 110 78.2
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 2.3e-44 182.2 111 75.7
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 2.3e-44 182.2 115 77.4
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 5.0e-44 181.0 112 76.8
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 5.0e-44 181.0 112 75.9
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 5.0e-44 181.0 112 76.8
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 6.6e-44 180.6 112 75.9
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 6.6e-44 180.6 120 74.2
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 1.1e-43 179.9 112 76.8
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 2.5e-43 178.7 114 76.3
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 3.3e-43 178.3 120 73.3
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 5.6e-43 177.6 110 76.4
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 4.7e-42 174.5 110 74.5
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 4.7e-42 174.5 114 78.1
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 4.7e-42 174.5 112 76.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.3e-41 172.2 139 64.0
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 4.4e-40 167.9 112 75.9
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 8.3e-39 163.7 119 70.6
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.4e-38 162.2 112 74.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 3.2e-38 161.8 90 82.2
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.2e-37 159.8 130 63.8
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 2.1e-37 159.1 161 54.7
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 3.5e-37 158.3 112 72.3
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 3.5e-37 158.3 110 68.2
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 3.9e-36 154.8 114 69.3
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 5.1e-36 154.5 91 78.0
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 4.3e-35 151.4 91 76.9
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 3.6e-34 148.3 111 69.4
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 3.1e-33 145.2 112 62.5
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 3.1e-33 145.2 114 67.5
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 7.6e-32 140.6 91 72.5
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 1.3e-31 139.8 84 81.0
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 1.3e-31 139.8 84 81.0
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 2.2e-31 139.0 83 80.7
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 1.1e-30 136.7 99 63.6
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.9e-30 136.0 100 64.0
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 3.5e-29 131.7 89 68.5
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 2.3e-28 129.0 101 60.4
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 3.0e-28 128.6 101 57.4
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 2.1e-26 122.5 69 79.7
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 5.2e-25 117.9 68 77.9
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 1.2e-24 116.7 111 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 8.4e-23 110.5 81 65.4
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 3.0e-20 102.1 92 56.5
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 4.0e-17 91.7 54 85.2
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 9.0e-17 90.5 64 71.9
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.8e-10 68.2 85 36.5


User provided reference genes

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