Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0352000 Oryza sativa ssp. japonica HOM05D001209 ORTHO05D001024 6.4e-72 274.2 166 100.0
Zm00001eb400840 Zea mays HOM05D001209 ORTHO05D001024 2.2e-16 89.7 173 41.6
Os03g0200200 Oryza sativa ssp. japonica HOM05D001209 ORTHO05D001024 5.0e-16 88.6 184 40.8
Zm00001eb007870 Zea mays HOM05D001209 ORTHO05D001024 1.0e-13 80.9 115 45.2
Aqoxy6G02567 Aquilegia oxysepala HOM05D001209 ORTHO05D001024 2.2e-11 73.2 161 32.3
Rhsim10G0098900 Rhododendron simsii HOM05D001209 ORTHO05D001024 1.1e-10 70.9 159 42.8
Eucgr.H02314 Eucalyptus grandis HOM05D001209 ORTHO05D001024 1.4e-10 70.5 159 32.7
ATR0739G088 Amborella trichopoda HOM05D001209 ORTHO05D001024 2.4e-10 69.7 159 33.3
Medtr4g097220 Medicago truncatula HOM05D001209 ORTHO05D001024 2.4e-10 69.7 161 34.2
PSO170G4342 Papaver somniferum HOM05D001209 ORTHO05D001024 2.4e-10 69.7 161 37.3
Lalb_Chr05g0225831 Lupinus albus HOM05D001209 ORTHO05D001024 3.1e-10 69.3 162 33.3
PSO017G4684 Papaver somniferum HOM05D001209 ORTHO05D001024 3.1e-10 69.3 161 32.9
SalBow5G4366 Salvia bowleyana HOM05D001209 ORTHO05D001024 3.1e-10 69.3 159 36.5
Migut.L00419 Erythranthe guttata HOM05D001209 ORTHO05D001024 6.9e-10 68.2 64 57.8
Sed0019128 Sechium edule HOM05D001209 ORTHO05D001024 6.9e-10 68.2 161 37.3
HPP92_007767 Vanilla planifolia HOM05D001209 ORTHO05D001024 6.9e-10 68.2 159 34.0
CANSAT01G1144 Cannabis sativa HOM05D001209 ORTHO05D001024 9.1e-10 67.8 165 32.7
Psat4g081400 Pisum sativum HOM05D001209 ORTHO05D001024 1.2e-09 67.4 164 34.1
HPP92_024908 Vanilla planifolia HOM05D001209 ORTHO05D001024 1.2e-09 67.4 159 33.3
Cfa004141 Carpinus fangiana HOM05D001209 ORTHO05D001024 1.5e-09 67.0 163 32.5
Nn1g04534 Nelumbo nucifera HOM05D001209 ORTHO05D001024 2.0e-09 66.6 159 34.0
unitig_0.g499 Utricularia gibba HOM05D001209 ORTHO05D001024 2.0e-09 66.6 114 39.5
MD02G1187500 Malus domestica HOM05D001209 ORTHO05D001024 2.6e-09 66.2 163 34.4
PGR102G1621 Punica granatum HOM05D001209 ORTHO05D001024 2.6e-09 66.2 166 31.3
CiPaw.01G003500 Carya illinoinensis HOM05D001209 ORTHO05D001024 3.4e-09 65.9 159 34.6
VMungo0251G2497 Vigna mungo HOM05D001209 ORTHO05D001024 3.4e-09 65.9 164 33.5
GSVIVG01002632001 Vitis vinifera HOM05D001209 ORTHO05D001024 3.4e-09 65.9 70 51.4
Ciclev10026573m.g Citrus clementina HOM05D001209 ORTHO05D001024 4.5e-09 65.5 171 36.3
Nitab4.5_0000142g0260 Nicotiana tabacum HOM05D001209 ORTHO05D001024 4.5e-09 65.5 162 32.1
TPR.G24258 Trifolium pratense HOM05D001209 ORTHO05D001024 4.5e-09 65.5 164 31.7
Actinidia11977 Actinidia chinensis HOM05D001209 ORTHO05D001024 5.9e-09 65.1 64 54.7
Dinv04038 Davidia involucrata HOM05D001209 ORTHO05D001024 5.9e-09 65.1 64 54.7
Oeu054203.1 Olea europaea HOM05D001209 ORTHO05D001024 5.9e-09 65.1 86 44.2
Migut.H00339 Erythranthe guttata HOM05D001209 ORTHO05D001024 7.7e-09 64.7 70 51.4
Glyma.05G106700 Glycine max HOM05D001209 ORTHO05D001024 7.7e-09 64.7 159 36.5
Oeu013329.1 Olea europaea HOM05D001209 ORTHO05D001024 7.7e-09 64.7 64 54.7
Phvul.003G234100 Phaseolus vulgaris HOM05D001209 ORTHO05D001024 7.7e-09 64.7 165 32.7
Solyc02g092240.3 Solanum lycopersicum HOM05D001209 ORTHO05D001024 7.7e-09 64.7 168 33.3
TAR376G0014 Trochodendron aralioides HOM05D001209 ORTHO05D001024 7.7e-09 64.7 87 46.0
Sopen02g036810 Solanum pennellii HOM05D001209 ORTHO05D001024 1.0e-08 64.3 168 33.3
Actinidia34535 Actinidia chinensis HOM05D001209 ORTHO05D001024 1.3e-08 63.9 64 56.2
MELO3C007644.2 Cucumis melo HOM05D001209 ORTHO05D001024 1.3e-08 63.9 166 30.7
MD15G1298400 Malus domestica HOM05D001209 ORTHO05D001024 1.3e-08 63.9 70 50.0
GSVIVG01007810001 Vitis vinifera HOM05D001209 ORTHO05D001024 1.3e-08 63.9 160 32.5
CsaV3_6G044200 Cucumis sativus L. HOM05D001209 ORTHO05D001024 1.7e-08 63.5 163 31.3
Duzib147G0977 Durio zibethinus HOM05D001209 ORTHO05D001024 1.7e-08 63.5 159 34.0
Nn5g30620 Nelumbo nucifera HOM05D001209 ORTHO05D001024 1.7e-08 63.5 112 39.3
RcHm_v2.0_Chr2g0108341 Rosa chinensis HOM05D001209 ORTHO05D001024 1.7e-08 63.5 70 51.4
CSS0039543 Camellia sinensis var. sinensis HOM05D001209 ORTHO05D001024 2.2e-08 63.2 162 32.7
Sed0002944 Sechium edule HOM05D001209 ORTHO05D001024 2.2e-08 63.2 170 31.8
MSTRG.3475 Avicennia marina HOM05D001209 ORTHO05D001024 2.9e-08 62.8 64 54.7
Glyma.17G160100 Glycine max HOM05D001209 ORTHO05D001024 2.9e-08 62.8 160 34.4
MBI16_g21722_MAGBIO Magnolia biondii HOM05D001209 ORTHO05D001024 2.9e-08 62.8 71 50.7
Actinidia16420 Actinidia chinensis HOM05D001209 ORTHO05D001024 3.8e-08 62.4 70 50.0
Cpa.g.sc6.4 Carica papaya HOM05D001209 ORTHO05D001024 3.8e-08 62.4 168 32.1
FvH4_1g17910 Fragaria vesca HOM05D001209 ORTHO05D001024 3.8e-08 62.4 159 37.7
Prupe.6G219300 Prunus persica HOM05D001209 ORTHO05D001024 3.8e-08 62.4 70 45.7
Haze_15272 Corylus avellana HOM05D001209 ORTHO05D001024 5.0e-08 62.0 64 51.6
Manes.12G115700 Manihot esculenta HOM05D001209 ORTHO05D001024 5.0e-08 62.0 63 58.7
Potri.007G005600 Populus trichocarpa HOM05D001209 ORTHO05D001024 5.0e-08 62.0 64 57.8
QL06p039450 Quercus lobata HOM05D001209 ORTHO05D001024 5.0e-08 62.0 64 53.1
arahy.Tifrunner.gnm1.ann1.VRU113 Arachis hypogaea HOM05D001209 ORTHO05D001024 6.5e-08 61.6 64 54.7
Ca_22099_v3 Cicer arietinum L. HOM05D001209 ORTHO05D001024 6.5e-08 61.6 160 32.5
FAN26G2138 Fragaria x ananassa HOM05D001209 ORTHO05D001024 6.5e-08 61.6 162 34.0
Oeu014254.1 Olea europaea HOM05D001209 ORTHO05D001024 6.5e-08 61.6 64 51.6
TAR628G0821 Trochodendron aralioides HOM05D001209 ORTHO05D001024 6.5e-08 61.6 164 31.7
Carub.0008s2685 Capsella rubella HOM05D001209 ORTHO05D001024 8.5e-08 61.2 166 34.3
ClCG01G017670 Citrullus lanatus HOM05D001209 ORTHO05D001024 8.5e-08 61.2 163 31.3
FAN19G0102 Fragaria x ananassa HOM05D001209 ORTHO05D001024 8.5e-08 61.2 159 37.7
FAN23G2535 Fragaria x ananassa HOM05D001209 ORTHO05D001024 8.5e-08 61.2 159 36.5
FAN28G0562 Fragaria x ananassa HOM05D001209 ORTHO05D001024 8.5e-08 61.2 159 37.1
Nitab4.5_0004025g0010 Nicotiana tabacum HOM05D001209 ORTHO05D001024 8.5e-08 61.2 167 31.7
PGSC0003DMG400021413 Solanum tuberosum HOM05D001209 ORTHO05D001024 8.5e-08 61.2 64 54.7
Thecc.01G073900 Theobroma cacao HOM05D001209 ORTHO05D001024 1.1e-07 60.8 70 47.1
Lj4g0022917 Lotus japonicus HOM05D001209 ORTHO05D001024 1.4e-07 60.5 70 45.7
Gohir.A02G150900 Gossypium hirsutum HOM05D001209 ORTHO05D001024 1.9e-07 60.1 64 53.1
Gorai.003G031100 Gossypium raimondii HOM05D001209 ORTHO05D001024 1.9e-07 60.1 64 53.1
Hund16407 Selenicereus undatus HOM05D001209 ORTHO05D001024 1.9e-07 60.1 161 29.2
BcaC03g18362 Brassica carinata HOM05D001209 ORTHO05D001024 2.5e-07 59.7 159 31.4
BraA09t36577Z Brassica rapa HOM05D001209 ORTHO05D001024 2.5e-07 59.7 64 54.7
THA.LOC104799775 Tarenaya hassleriana HOM05D001209 ORTHO05D001024 2.5e-07 59.7 80 46.2
THA.LOC104808401 Tarenaya hassleriana HOM05D001209 ORTHO05D001024 2.5e-07 59.7 80 46.2
Peaxi162Scf00548g00314 Petunia axillaris HOM05D001209 ORTHO05D001024 3.2e-07 59.3 159 37.1
Atru.chr3.1025 Acer truncatum HOM05D001209 ORTHO05D001024 4.2e-07 58.9 164 38.4
MSTRG.15347 Avicennia marina HOM05D001209 ORTHO05D001024 4.2e-07 58.9 63 50.8
C02p64380 Brassica napus HOM05D001209 ORTHO05D001024 4.2e-07 58.9 64 53.1
BolC2t12502H Brassica oleracea HOM05D001209 ORTHO05D001024 4.2e-07 58.9 64 53.1
BolC9t53975H Brassica oleracea HOM05D001209 ORTHO05D001024 4.2e-07 58.9 64 53.1
COL.COLO4_11590 Corchorus olitorius HOM05D001209 ORTHO05D001024 4.2e-07 58.9 64 51.6
Lsat_1_v5_gn_3_86700 Lactuca sativa HOM05D001209 ORTHO05D001024 4.2e-07 58.9 65 49.2
Sp2g29030 Schrenkiella parvula HOM05D001209 ORTHO05D001024 4.2e-07 58.9 64 53.1
A09p09240 Brassica napus HOM05D001209 ORTHO05D001024 5.5e-07 58.5 64 53.1
Duzib264G1166 Durio zibethinus HOM05D001209 ORTHO05D001024 5.5e-07 58.5 64 51.6
Thhalv10004994m.g Eutrema salsugineum HOM05D001209 ORTHO05D001024 5.5e-07 58.5 64 53.1
Lsat_1_v5_gn_2_82620 Lactuca sativa HOM05D001209 ORTHO05D001024 5.5e-07 58.5 64 50.0
ECA246G2308 Erigeron canadensis HOM05D001209 ORTHO05D001024 7.2e-07 58.2 64 46.9
Manes.13G110500 Manihot esculenta HOM05D001209 ORTHO05D001024 7.2e-07 58.2 70 50.0
BcaB04g20040 Brassica carinata HOM05D001209 ORTHO05D001024 9.4e-07 57.8 64 51.6
BcaB04g20041 Brassica carinata HOM05D001209 ORTHO05D001024 9.4e-07 57.8 64 51.6
BcaC04g23240 Brassica carinata HOM05D001209 ORTHO05D001024 9.4e-07 57.8 64 51.6
Gohir.D03G029500 Gossypium hirsutum HOM05D001209 ORTHO05D001024 9.4e-07 57.8 64 51.6
AL8G43680 Arabidopsis lyrata HOM05D001209 ORTHO05D001024 1.2e-06 57.4 159 32.1
BcaC04g23238 Brassica carinata HOM05D001209 ORTHO05D001024 1.2e-06 57.4 64 51.6
A02p44120 Brassica napus HOM05D001209 ORTHO05D001024 1.2e-06 57.4 159 30.8
C09p10800 Brassica napus HOM05D001209 ORTHO05D001024 1.2e-06 57.4 64 51.6
BraA02t09335Z Brassica rapa HOM05D001209 ORTHO05D001024 1.2e-06 57.4 159 30.8
Gohir.A11G040700 Gossypium hirsutum HOM05D001209 ORTHO05D001024 1.2e-06 57.4 171 29.2
Gohir.A11G214100 Gossypium hirsutum HOM05D001209 ORTHO05D001024 1.2e-06 57.4 160 31.9
arahy.Tifrunner.gnm1.ann1.82RE74 Arachis hypogaea HOM05D001209 ORTHO05D001024 1.6e-06 57.0 70 38.6
HanXRQChr12g0376321 Helianthus annuus HOM05D001209 ORTHO05D001024 1.6e-06 57.0 159 30.8
Hund09413 Selenicereus undatus HOM05D001209 ORTHO05D001024 1.6e-06 57.0 77 42.9
TWI18G0752 Tripterygium wilfordii HOM05D001209 ORTHO05D001024 1.6e-06 57.0 163 30.7
vmacro05418 Vaccinium macrocarpon HOM05D001209 ORTHO05D001024 1.6e-06 57.0 54 63.0
THA.LOC104819267 Tarenaya hassleriana HOM05D001209 ORTHO05D001024 2.1e-06 56.6 64 51.6
THA.LOC104827670 Tarenaya hassleriana HOM05D001209 ORTHO05D001024 2.1e-06 56.6 159 32.1
EL10Ac6g15610 Beta vulgaris HOM05D001209 ORTHO05D001024 3.6e-06 55.8 96 38.5
Aa31LG1G16170 Aethionema arabicum HOM05D001209 ORTHO05D001024 4.7e-06 55.5 64 48.4
AT5G67620 Arabidopsis thaliana HOM05D001209 ORTHO05D001024 4.7e-06 55.5 166 32.5
ClCG06G016790 Citrullus lanatus HOM05D001209 ORTHO05D001024 4.7e-06 55.5 170 28.2
DCAR_026118 Daucus carota HOM05D001209 ORTHO05D001024 4.7e-06 55.5 79 41.8
Gohir.D11G209300 Gossypium hirsutum HOM05D001209 ORTHO05D001024 4.7e-06 55.5 70 44.3
AL8G24080 Arabidopsis lyrata HOM05D001209 ORTHO05D001024 6.1e-06 55.1 70 42.9
MSTRG.7878 Avicennia marina HOM05D001209 ORTHO05D001024 6.1e-06 55.1 72 45.8
arahy.Tifrunner.gnm1.ann1.K7KBAQ Arachis hypogaea HOM05D001209 ORTHO05D001024 7.9e-06 54.7 70 37.1
Duzib187G1382 Durio zibethinus HOM05D001209 ORTHO05D001024 7.9e-06 54.7 159 32.1


User provided reference genes

Program Settings