Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 6.8e-212 740.3 361 100.0
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 6.3e-133 478.0 367 63.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.0e-131 473.0 362 62.4
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.5e-130 467.6 373 64.1
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 9.4e-129 464.2 376 63.3
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.7e-128 462.6 375 61.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 6.1e-128 461.5 367 64.0
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.0e-127 460.7 373 62.5
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 2.3e-127 459.5 364 64.3
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.0e-127 459.1 367 63.8
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.2e-127 458.4 362 62.4
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 6.8e-127 458.0 365 64.9
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-126 457.2 367 62.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-126 457.2 367 62.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.5e-126 456.8 368 62.0
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.0e-126 456.4 368 64.1
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 2.6e-126 456.1 366 61.5
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.4e-126 455.7 364 64.8
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.5e-126 454.5 365 63.0
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.2e-125 453.0 364 63.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.8e-125 452.6 368 61.7
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.7e-125 452.2 366 62.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 4.9e-125 451.8 364 63.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 8.3e-125 451.1 369 61.8
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.1e-124 450.7 367 62.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.1e-124 450.7 367 60.5
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.4e-124 450.3 365 61.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.8e-124 449.9 371 60.6
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 3.1e-124 449.1 367 61.6
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.1e-124 449.1 367 61.3
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 4.1e-124 448.7 366 62.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.2e-124 447.6 364 61.3
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 9.2e-124 447.6 363 62.3
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-123 447.2 364 61.0
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.7e-123 446.0 367 61.0
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.7e-123 446.0 364 61.3
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 4.5e-123 445.3 363 62.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 5.9e-123 444.9 363 61.4
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 7.7e-123 444.5 368 62.0
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.7e-122 443.4 369 61.2
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.7e-122 443.4 365 59.7
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.3e-122 443.0 367 61.0
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 5.0e-122 441.8 371 61.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 6.6e-122 441.4 366 60.9
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 8.6e-122 441.0 368 59.0
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 8.6e-122 441.0 359 60.2
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.1e-121 440.7 365 61.4
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.5e-121 439.5 367 61.9
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 2.5e-121 439.5 367 61.6
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.3e-121 439.1 363 60.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.3e-121 439.1 366 60.7
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 7.3e-121 438.0 366 58.5
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 9.5e-121 437.6 366 60.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 9.5e-121 437.6 364 60.4
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.1e-120 436.4 363 60.6
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 8.0e-120 434.5 364 61.3
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.4e-119 433.7 366 57.9
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.3e-119 433.0 375 59.2
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.3e-119 433.0 367 60.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.3e-119 433.0 366 57.9
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 5.2e-119 431.8 365 61.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 5.2e-119 431.8 365 61.6
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 5.2e-119 431.8 367 61.3
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 5.2e-119 431.8 366 60.1
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 7.5e-118 427.9 364 59.9
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.2e-117 426.4 351 60.1
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.2e-117 426.4 368 59.5
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.9e-117 425.2 375 57.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.4e-117 424.9 367 59.1
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.4e-117 424.9 382 57.6
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.3e-117 424.5 364 59.6
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.1e-116 424.1 370 57.8
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-116 423.7 367 59.1
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 3.2e-116 422.5 366 59.8
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 5.4e-116 421.8 392 55.9
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.7e-115 419.5 377 57.8
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.3e-114 416.4 367 58.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.3e-114 416.4 357 59.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 3.0e-114 416.0 362 57.5
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.1e-113 414.1 363 58.4
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.3e-113 412.5 365 56.2
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.2e-112 410.6 338 61.8
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 8.0e-112 407.9 362 56.1
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.0e-111 407.5 369 56.1
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.3e-111 406.4 386 56.0
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 9.8e-110 401.0 333 62.2
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.3e-109 400.6 364 56.9
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.9e-109 399.4 366 56.8
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 3.7e-109 399.1 365 55.9
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 3.7e-109 399.1 364 56.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 4.9e-109 398.7 365 56.7
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 6.4e-109 398.3 381 53.5
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.3e-109 397.9 367 55.0
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-108 397.5 366 54.6
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.9e-108 396.7 367 56.1
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.2e-108 396.0 357 58.3
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 9.2e-108 394.4 365 56.7
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.2e-107 394.0 366 55.7
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-107 394.0 365 57.0
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.2e-107 394.0 359 56.0
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 3.5e-107 392.5 365 56.2
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.5e-107 392.5 365 55.9
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.0e-106 391.0 365 56.2
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.0e-106 391.0 242 76.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.7e-106 390.2 366 56.0
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.9e-106 389.0 366 55.7
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.9e-106 389.0 366 55.7
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 5.0e-106 388.7 366 54.6
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.3e-105 384.8 368 56.2
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 6.2e-104 381.7 432 47.9
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-102 377.5 357 55.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.5e-102 377.1 357 55.2
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.6e-102 376.3 537 41.7
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.4e-102 375.9 357 54.9
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.4e-102 375.9 358 53.4
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.4e-102 375.6 324 60.5
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 9.8e-102 374.4 367 55.9
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-100 370.5 366 54.9
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 5.4e-100 368.6 366 54.4
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 4.6e-99 365.5 365 53.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-98 364.0 356 55.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 3.9e-98 362.5 365 51.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.5e-97 360.5 374 51.9
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.5e-97 360.5 355 53.8
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.1e-96 356.7 370 50.3
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 8.1e-96 354.8 339 54.6
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-95 354.0 392 51.0
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.4e-94 349.4 344 55.5
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-93 347.4 382 49.7
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.6e-91 339.0 450 44.2
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 8.6e-90 334.7 329 53.5
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 3.6e-88 329.3 346 53.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.1e-87 327.8 432 43.8
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.6e-78 296.6 390 43.1
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 4.5e-78 295.8 357 46.5
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 7.1e-76 288.5 374 43.0
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.1e-75 287.0 359 45.1
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.0e-74 283.1 241 58.5
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 8.7e-66 255.0 369 40.9
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.6e-64 250.8 368 41.0
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.5e-62 244.2 356 40.4
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.3e-61 241.1 318 47.5
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.6e-59 234.2 161 64.0
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.9e-57 227.3 239 58.6
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.8e-56 223.4 390 34.6
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.4e-54 216.5 233 53.6
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.5e-54 216.1 233 55.4
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 7.6e-54 215.3 271 48.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 7.6e-54 215.3 271 48.3
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.2e-51 208.0 170 62.4
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.3e-49 199.5 205 56.1
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 3.8e-45 186.4 135 71.1
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.7e-37 161.0 384 30.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.4e-36 157.9 133 54.9
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.1e-31 141.7 358 31.8
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 8.0e-27 125.6 88 61.4
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.7e-21 107.8 118 47.5
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.1e-20 105.1 75 57.3
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 3.5e-14 83.6 78 60.3
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.5e-13 79.3 63 63.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.3e-08 65.1 33 81.8


User provided reference genes

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