Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0318900 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 5.0e-106 387.9 210 100.0
Os02g0760500 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 1.3e-13 80.9 38 97.4
Zm00001eb255610 Zea mays HOM05D000483 ORTHO05D000158 5.5e-12 75.5 42 85.7
ECA246G4436 Erigeron canadensis HOM05D000483 ORTHO05D000158 2.3e-10 70.1 38 78.9
HanXRQChr05g0163431 Helianthus annuus HOM05D000483 ORTHO05D000158 1.1e-09 67.8 49 63.3
Sed0017995 Sechium edule HOM05D000483 ORTHO05D000158 2.0e-09 67.0 55 60.0
Lsat_1_v5_gn_6_106280 Lactuca sativa HOM05D000483 ORTHO05D000158 4.4e-09 65.9 37 73.0
CiPaw.07G166800 Carya illinoinensis HOM05D000483 ORTHO05D000158 3.7e-08 62.8 55 60.0
Cc10_g15780 Coffea canephora HOM05D000483 ORTHO05D000158 6.3e-08 62.0 38 76.3
ClCG08G011740 Citrullus lanatus HOM05D000483 ORTHO05D000158 8.2e-08 61.6 55 58.2
Potri.002G104700 Populus trichocarpa HOM05D000483 ORTHO05D000158 8.2e-08 61.6 45 71.1
Sabra02G0082200 Salix brachista HOM05D000483 ORTHO05D000158 8.2e-08 61.6 45 71.1
Ciclev10030411m.g Citrus clementina HOM05D000483 ORTHO05D000158 1.1e-07 61.2 39 74.4
THA.LOC104816800 Tarenaya hassleriana HOM05D000483 ORTHO05D000158 1.8e-07 60.5 40 75.0
vmacro04662 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 1.8e-07 60.5 42 73.8
DCAR_020017 Daucus carota HOM05D000483 ORTHO05D000158 3.1e-07 59.7 37 75.7
LjContig00408g0017560 Lotus japonicus HOM05D000483 ORTHO05D000158 3.1e-07 59.7 54 55.6
Lj4A89G41 Lonicera japonica HOM05D000483 ORTHO05D000158 4.1e-07 59.3 39 71.8
Aa31LG1G5250 Aethionema arabicum HOM05D000483 ORTHO05D000158 5.3e-07 58.9 40 67.5
MBI02_g32613_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 5.3e-07 58.9 43 69.8
Actinidia29619 Actinidia chinensis HOM05D000483 ORTHO05D000158 9.1e-07 58.2 44 70.5
COL.COLO4_35215 Corchorus olitorius HOM05D000483 ORTHO05D000158 9.1e-07 58.2 45 66.7
CsaV3_2G030360 Cucumis sativus L. HOM05D000483 ORTHO05D000158 9.1e-07 58.2 43 62.8
Solyc04g076200.3 Solanum lycopersicum HOM05D000483 ORTHO05D000158 9.1e-07 58.2 45 62.2
EL10Ac1g01068 Beta vulgaris HOM05D000483 ORTHO05D000158 1.2e-06 57.8 48 58.3
CANSAT25G1929 Cannabis sativa HOM05D000483 ORTHO05D000158 1.2e-06 57.8 58 55.2
A08p34380 Brassica napus HOM05D000483 ORTHO05D000158 1.5e-06 57.4 40 70.0
BraA08t35350Z Brassica rapa HOM05D000483 ORTHO05D000158 1.5e-06 57.4 40 70.0
QL09p017542 Quercus lobata HOM05D000483 ORTHO05D000158 1.5e-06 57.4 44 68.2
Hund27013 Selenicereus undatus HOM05D000483 ORTHO05D000158 1.5e-06 57.4 38 68.4
Sopen04g030000 Solanum pennellii HOM05D000483 ORTHO05D000158 1.5e-06 57.4 45 62.2
Carub.0001s0908 Capsella rubella HOM05D000483 ORTHO05D000158 2.0e-06 57.0 40 67.5
Thhalv10008924m.g Eutrema salsugineum HOM05D000483 ORTHO05D000158 2.0e-06 57.0 40 67.5
Gohir.A06G032620 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.0e-06 57.0 45 60.0
Gohir.D06G032200 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.0e-06 57.0 45 60.0
Hma1.2p1_0010F.1_g006860 Hydrangea macrophylla HOM05D000483 ORTHO05D000158 2.0e-06 57.0 55 56.4
CSS0003758 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 2.6e-06 56.6 43 69.8
Eucgr.F00412 Eucalyptus grandis HOM05D000483 ORTHO05D000158 2.6e-06 56.6 43 67.4
Gorai.010G035500 Gossypium raimondii HOM05D000483 ORTHO05D000158 2.6e-06 56.6 45 60.0
Thecc.08G069300 Theobroma cacao HOM05D000483 ORTHO05D000158 2.6e-06 56.6 45 68.9
Ah.05g170770 Amaranthus hybridus HOM05D000483 ORTHO05D000158 3.5e-06 56.2 38 65.8
ATR0022G067 Amborella trichopoda HOM05D000483 ORTHO05D000158 3.5e-06 56.2 45 62.2
Cfa013690 Carpinus fangiana HOM05D000483 ORTHO05D000158 3.5e-06 56.2 44 65.9
Manes.18G059911 Manihot esculenta HOM05D000483 ORTHO05D000158 3.5e-06 56.2 45 62.2
Nitab4.5_0000131g0380 Nicotiana tabacum HOM05D000483 ORTHO05D000158 3.5e-06 56.2 45 60.0
Nitab4.5_0003525g0050 Nicotiana tabacum HOM05D000483 ORTHO05D000158 3.5e-06 56.2 45 60.0
Sc01g0001110 Simmondsia chinensis HOM05D000483 ORTHO05D000158 3.5e-06 56.2 53 56.6
PGSC0003DMG400012895 Solanum tuberosum HOM05D000483 ORTHO05D000158 3.5e-06 56.2 45 60.0
BcaNung06982 Brassica carinata HOM05D000483 ORTHO05D000158 4.5e-06 55.8 40 67.5
C08p13150 Brassica napus HOM05D000483 ORTHO05D000158 4.5e-06 55.8 40 67.5
BolC8t48943H Brassica oleracea HOM05D000483 ORTHO05D000158 4.5e-06 55.8 40 67.5
Medtr5g065980 Medicago truncatula HOM05D000483 ORTHO05D000158 5.9e-06 55.5 44 63.6
arahy.Tifrunner.gnm1.ann1.AGS0VV Arachis hypogaea HOM05D000483 ORTHO05D000158 7.7e-06 55.1 54 53.7
arahy.Tifrunner.gnm1.ann1.M8HDEY Arachis hypogaea HOM05D000483 ORTHO05D000158 7.7e-06 55.1 54 53.7
Nn5g29915 Nelumbo nucifera HOM05D000483 ORTHO05D000158 7.7e-06 55.1 43 65.1


User provided reference genes

Program Settings