Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0202200 Oryza sativa ssp. japonica HOM05D002021 ORTHO05D294369 1.8e-66 255.8 127 100.0
Os06g0109000 Oryza sativa ssp. japonica HOM05D002021 ORTHO05D002077 2.1e-14 82.8 57 77.2
Zm00001eb379200 Zea mays HOM05D002021 ORTHO05D002077 4.3e-12 75.1 58 67.2
TAR374G0664 Trochodendron aralioides HOM05D002021 ORTHO05D002077 9.7e-12 73.9 57 70.2
ATR0661G039 Amborella trichopoda HOM05D002021 ORTHO05D002077 1.3e-11 73.6 57 70.2
Eucgr.E00644 Eucalyptus grandis HOM05D002021 ORTHO05D002077 1.3e-11 73.6 52 71.2
ECA233G1556 Erigeron canadensis HOM05D002021 ORTHO05D002077 2.2e-11 72.8 57 66.7
PSO063G5559 Papaver somniferum HOM05D002021 ORTHO05D002077 2.2e-11 72.8 52 67.3
MD14G1109700 Malus domestica HOM05D002021 ORTHO05D002077 2.8e-11 72.4 57 66.7
Prupe.5G104500 Prunus persica HOM05D002021 ORTHO05D002077 2.8e-11 72.4 52 71.2
Lj8A217T72 Lonicera japonica HOM05D002021 ORTHO05D002077 3.7e-11 72.0 52 69.2
RcHm_v2.0_Chr7g0196931 Rosa chinensis HOM05D002021 ORTHO05D002077 3.7e-11 72.0 52 69.2
FAN13G0288 Fragaria x ananassa HOM05D002021 ORTHO05D002077 4.8e-11 71.6 52 67.3
MBI11_g24784_MAGBIO Magnolia biondii HOM05D002021 ORTHO05D002077 4.8e-11 71.6 57 68.4
SEGI_31949 Sequoiadendron giganteum HOM05D002021 ORTHO05D002077 6.3e-11 71.2 57 64.9
AagrBONN_evm.TU.Sc2ySwM_228.4246 Anthoceros agrestis HOM05D002021 ORTHO05D002077 1.1e-10 70.5 57 64.9
CANSAT21G1619 Cannabis sativa HOM05D002021 ORTHO05D002077 1.1e-10 70.5 52 67.3
CDE02G2055 Ceratophyllum demersum HOM05D002021 ORTHO05D002077 1.1e-10 70.5 57 66.7
CDE11G0977 Ceratophyllum demersum HOM05D002021 ORTHO05D002077 1.1e-10 70.5 57 66.7
MD06G1088600 Malus domestica HOM05D002021 ORTHO05D002077 1.1e-10 70.5 52 69.2
Aqoxy5G03826 Aquilegia oxysepala HOM05D002021 ORTHO05D002077 1.4e-10 70.1 57 63.2
Cfa012197 Carpinus fangiana HOM05D002021 ORTHO05D002077 1.4e-10 70.1 52 69.2
COL.COLO4_34506 Corchorus olitorius HOM05D002021 ORTHO05D002077 1.4e-10 70.1 57 66.7
FvH4_5g02940 Fragaria vesca HOM05D002021 ORTHO05D002077 1.4e-10 70.1 57 63.2
FAN13G1480 Fragaria x ananassa HOM05D002021 ORTHO05D002077 1.4e-10 70.1 57 63.2
FAN18G0111 Fragaria x ananassa HOM05D002021 ORTHO05D002077 1.4e-10 70.1 57 63.2
Mapoly0013s0076 Marchantia polymorpha HOM05D002021 ORTHO05D002077 1.4e-10 70.1 57 64.9
PGR042G3963 Punica granatum HOM05D002021 ORTHO05D002077 1.8e-10 69.7 52 67.3
Pp3c16_13550 Physcomitrium patens HOM05D002021 ORTHO05D002077 2.4e-10 69.3 57 63.2
FAN08G1822 Fragaria x ananassa HOM05D002021 ORTHO05D002077 3.1e-10 68.9 57 61.4
Oeu042343.2 Olea europaea HOM05D002021 ORTHO05D002077 3.1e-10 68.9 57 63.2
Thecc.03G283800 Theobroma cacao HOM05D002021 ORTHO05D002077 3.1e-10 68.9 57 64.9
Lsat_1_v5_gn_6_5201 Lactuca sativa HOM05D002021 ORTHO05D002077 4.1e-10 68.6 52 65.4
SMO118G0154 Selaginella moellendorffii HOM05D002021 ORTHO05D002077 4.1e-10 68.6 57 63.2
SGA_v2.0_scaffold111G31488 Striga asiatica HOM05D002021 ORTHO05D002077 4.1e-10 68.6 53 64.2
HPP92_008927 Vanilla planifolia HOM05D002021 ORTHO05D002077 4.1e-10 68.6 57 64.9
GSVIVG01019398001 Vitis vinifera HOM05D002021 ORTHO05D002077 4.1e-10 68.6 52 69.2
HanXRQChr13g0394831 Helianthus annuus HOM05D002021 ORTHO05D002077 5.3e-10 68.2 57 61.4
Manes.02G018900 Manihot esculenta HOM05D002021 ORTHO05D002077 6.9e-10 67.8 53 64.2
CiPaw.12G090500 Carya illinoinensis HOM05D002021 ORTHO05D002077 9.1e-10 67.4 52 67.3
Duzib205G0620 Durio zibethinus HOM05D002021 ORTHO05D002077 9.1e-10 67.4 57 63.2
RcHm_v2.0_Chr7g0196941 Rosa chinensis HOM05D002021 ORTHO05D002077 9.1e-10 67.4 57 59.6
TWI60G1182 Tripterygium wilfordii HOM05D002021 ORTHO05D002077 9.1e-10 67.4 57 63.2
Haze_08820 Corylus avellana HOM05D002021 ORTHO05D002077 1.2e-09 67.0 52 67.3
Rhsim02G0234500 Rhododendron simsii HOM05D002021 ORTHO05D002077 1.2e-09 67.0 52 61.5
Sabra03G0093300 Salix brachista HOM05D002021 ORTHO05D002077 1.2e-09 67.0 52 65.4
Dinv38914 Davidia involucrata HOM05D002021 ORTHO05D002077 1.5e-09 66.6 52 67.3
Pp3c6_17410 Physcomitrium patens HOM05D002021 ORTHO05D002077 1.5e-09 66.6 57 61.4
Pp3c6_17413 Physcomitrium patens HOM05D002021 ORTHO05D002077 1.5e-09 66.6 57 61.4
QL12p032270 Quercus lobata HOM05D002021 ORTHO05D002077 1.5e-09 66.6 52 67.3
Migut.E01195 Erythranthe guttata HOM05D002021 ORTHO05D002077 2.0e-09 66.2 53 62.3
arahy.Tifrunner.gnm1.ann1.BBR22J Arachis hypogaea HOM05D002021 ORTHO05D002077 2.6e-09 65.9 53 64.2
arahy.Tifrunner.gnm1.ann1.FV54AT Arachis hypogaea HOM05D002021 ORTHO05D002077 2.6e-09 65.9 53 64.2
Potri.003G131200 Populus trichocarpa HOM05D002021 ORTHO05D002077 2.6e-09 65.9 52 63.5
Atru.chr9.2145_Atru.chr9.2146 Acer truncatum HOM05D002021 ORTHO05D002077 3.4e-09 65.5 52 63.5
Glyma.11G022300 Glycine max HOM05D002021 ORTHO05D002077 3.4e-09 65.5 57 59.6
LjContig00312_ERROPOS870357g0013224 Lotus japonicus HOM05D002021 ORTHO05D002077 3.4e-09 65.5 53 62.3
Gohir.A12G232901 Gossypium hirsutum HOM05D002021 ORTHO05D002077 4.5e-09 65.1 57 61.4
Gohir.D12G232500 Gossypium hirsutum HOM05D002021 ORTHO05D002077 4.5e-09 65.1 57 61.4
Gorai.008G248800 Gossypium raimondii HOM05D002021 ORTHO05D002077 4.5e-09 65.1 57 61.4
vmacro11396 Vaccinium macrocarpon HOM05D002021 ORTHO05D002077 4.5e-09 65.1 53 60.4
Cc08_g15060 Coffea canephora HOM05D002021 ORTHO05D002077 5.9e-09 64.7 57 61.4
Hma1.2p1_1123F.1_g259350 Hydrangea macrophylla HOM05D002021 ORTHO05D002077 5.9e-09 64.7 57 57.9
Peaxi162Scf00074g01920 Petunia axillaris HOM05D002021 ORTHO05D002077 5.9e-09 64.7 57 59.6
VMungo1215G2108 Vigna mungo HOM05D002021 ORTHO05D002077 5.9e-09 64.7 53 62.3
Glyma.01G221400 Glycine max HOM05D002021 ORTHO05D002077 7.7e-09 64.3 57 59.6
Hma1.2p1_1123F.1_g259330 Hydrangea macrophylla HOM05D002021 ORTHO05D002077 1.3e-08 63.5 57 59.6
Hma1.2p1_1123F.1_g259340 Hydrangea macrophylla HOM05D002021 ORTHO05D002077 1.3e-08 63.5 57 59.6
Nitab4.5_0006540g0020 Nicotiana tabacum HOM05D002021 ORTHO05D002077 1.3e-08 63.5 57 57.9
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.3e-08 63.5 57 57.9
CAN.G532.13 Capsicum annuum HOM05D002021 ORTHO05D002077 1.7e-08 63.2 57 57.9
Ca_24545_v3 Cicer arietinum L. HOM05D002021 ORTHO05D002077 1.7e-08 63.2 52 59.6
MCO11G929 Micromonas commoda HOM05D002021 ORTHO05D002077 1.7e-08 63.2 53 56.6
SEGI_13425 Sequoiadendron giganteum HOM05D002021 ORTHO05D002077 1.7e-08 63.2 57 57.9
Solyc08g081390.4 Solanum lycopersicum HOM05D002021 ORTHO05D002077 1.7e-08 63.2 57 57.9
Sopen08g029710 Solanum pennellii HOM05D002021 ORTHO05D002077 1.7e-08 63.2 57 57.9
PGSC0003DMG400012191 Solanum tuberosum HOM05D002021 ORTHO05D002077 1.7e-08 63.2 57 57.9
Ciclev10020727m.g Citrus clementina HOM05D002021 ORTHO05D002077 2.2e-08 62.8 52 61.5
Sc01g0009740 Simmondsia chinensis HOM05D002021 ORTHO05D002077 2.2e-08 62.8 52 63.5
DCAR_005568 Daucus carota HOM05D002021 ORTHO05D002077 2.9e-08 62.4 52 59.6
Medtr5g010090 Medicago truncatula HOM05D002021 ORTHO05D002077 2.9e-08 62.4 52 59.6
Psat2g184520 Pisum sativum HOM05D002021 ORTHO05D002077 2.9e-08 62.4 52 59.6
TPR.G6711 Trifolium pratense HOM05D002021 ORTHO05D002077 2.9e-08 62.4 52 59.6
Phvul.002G158900 Phaseolus vulgaris HOM05D002021 ORTHO05D002077 3.8e-08 62.0 53 58.5
MELO3C005698.2 Cucumis melo HOM05D002021 ORTHO05D002077 5.0e-08 61.6 52 59.6
CsaV3_5G002570 Cucumis sativus L. HOM05D002021 ORTHO05D002077 5.0e-08 61.6 52 59.6
MBI11_g47064_MAGBIO Magnolia biondii HOM05D002021 ORTHO05D002077 6.5e-08 61.2 37 78.4
AagrBONN_evm.TU.Sc2ySwM_368.1067 Anthoceros agrestis HOM05D002021 ORTHO05D002077 1.4e-07 60.1 57 57.9
SMO367G0471 Selaginella moellendorffii HOM05D002021 ORTHO05D002077 1.4e-07 60.1 57 56.1
Sed0024203 Sechium edule HOM05D002021 ORTHO05D002077 2.5e-07 59.3 52 59.6
ClCG01G002470 Citrullus lanatus HOM05D002021 ORTHO05D002077 3.2e-07 58.9 52 57.7
FAN04G0304 Fragaria x ananassa HOM05D002021 ORTHO05D002077 4.2e-07 58.5 36 75.0
Manes.09G162800 Manihot esculenta HOM05D002021 ORTHO05D002077 7.2e-07 57.8 57 54.4
Nn6g33324 Nelumbo nucifera HOM05D002021 ORTHO05D002077 1.6e-06 56.6 37 70.3
Pp3c2_1670 Physcomitrium patens HOM05D002021 ORTHO05D002077 1.6e-06 56.6 59 54.2
Pp3c1_34830 Physcomitrium patens HOM05D002021 ORTHO05D002077 2.1e-06 56.2 59 54.2
BolC1t05712H Brassica oleracea HOM05D002021 ORTHO05D002077 2.7e-06 55.8 57 52.6
CAN.G1.34 Capsicum annuum HOM05D002021 ORTHO05D002077 2.7e-06 55.8 57 52.6
QL03p004186 Quercus lobata HOM05D002021 ORTHO05D002077 2.7e-06 55.8 57 54.4
QL03p004200 Quercus lobata HOM05D002021 ORTHO05D002077 2.7e-06 55.8 53 54.7
BcaC05g30171 Brassica carinata HOM05D002021 ORTHO05D002077 3.6e-06 55.5 57 50.9
A06p05800 Brassica napus HOM05D002021 ORTHO05D002077 3.6e-06 55.5 57 52.6
BraA06t23790Z Brassica rapa HOM05D002021 ORTHO05D002077 3.6e-06 55.5 57 52.6
QL03p004754 Quercus lobata HOM05D002021 ORTHO05D002077 3.6e-06 55.5 53 54.7
Solyc10g045430.2 Solanum lycopersicum HOM05D002021 ORTHO05D002077 3.6e-06 55.5 57 52.6
Sopen10g015610 Solanum pennellii HOM05D002021 ORTHO05D002077 3.6e-06 55.5 57 52.6
MCO11G600 Micromonas commoda HOM05D002021 ORTHO05D002077 4.7e-06 55.1 51 49.0
PGSC0003DMG400034328 Solanum tuberosum HOM05D002021 ORTHO05D002077 4.7e-06 55.1 57 50.9
THA.LOC104821705 Tarenaya hassleriana HOM05D002021 ORTHO05D002077 4.7e-06 55.1 57 50.9
Aa31LG5G15540 Aethionema arabicum HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
AL3G15590 Arabidopsis lyrata HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
AT3G05170 Arabidopsis thaliana HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
BcaB04g21371 Brassica carinata HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
BNapus_Darmor_BZH_scaffold_114p00280 Brassica napus HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
BraSC132t45520Z Brassica rapa HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
CARHR079510 Cardamine hirsuta HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
Cfa006538 Carpinus fangiana HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
Thhalv10021179m.g Eutrema salsugineum HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
Nitab4.5_0001510g0010 Nicotiana tabacum HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
Sp3g04020 Schrenkiella parvula HOM05D002021 ORTHO05D002077 6.1e-06 54.7 57 50.9
BcaC05g30006 Brassica carinata HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
A05p42400 Brassica napus HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
C05p62020 Brassica napus HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
BolC5t34862H Brassica oleracea HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
BolSC132t60221H Brassica oleracea HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
BraSC300t45962Z Brassica rapa HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
Carub.0003s0442 Capsella rubella HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
Cpa.g.sc48.4 Carica papaya HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 52.6
Haze_04243 Corylus avellana HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
PGR083G2246 Punica granatum HOM05D002021 ORTHO05D002077 7.9e-06 54.3 57 50.9
Sed0024101 Sechium edule HOM05D002021 ORTHO05D002077 7.9e-06 54.3 69 43.5


User provided reference genes

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