Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.2e-88 329.7 158 100.0
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 6.3e-53 211.1 239 51.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.8e-36 156.4 219 43.4
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 4.7e-24 115.2 72 65.3
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.4e-23 113.6 74 62.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.3e-23 112.8 74 63.5
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.3e-23 112.8 74 63.5
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.1e-23 112.5 78 65.4
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.2e-23 111.7 70 67.1
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.8e-23 111.3 70 67.1
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 8.9e-23 110.9 71 67.6
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 8.9e-23 110.9 71 64.8
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 8.9e-23 110.9 71 69.0
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 8.9e-23 110.9 70 64.3
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.9e-23 110.9 74 62.2
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 8.9e-23 110.9 69 66.7
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 8.9e-23 110.9 77 58.4
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.2e-22 110.5 67 67.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.5e-22 110.2 72 63.9
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.6e-22 109.4 70 64.3
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 2.6e-22 109.4 71 62.0
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 4.4e-22 108.6 73 64.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 5.8e-22 108.2 77 57.1
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 5.8e-22 108.2 71 63.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 7.5e-22 107.8 69 65.2
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 9.8e-22 107.5 71 62.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.8e-22 107.5 71 60.6
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.3e-21 107.1 70 61.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.3e-21 107.1 75 65.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.3e-21 107.1 71 63.4
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 1.7e-21 106.7 64 64.1
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.7e-21 106.7 63 68.3
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.2e-21 106.3 76 57.9
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 2.2e-21 106.3 71 62.0
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 2.2e-21 106.3 71 62.0
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 2.2e-21 106.3 72 63.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.2e-21 106.3 73 60.3
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 2.2e-21 106.3 118 44.1
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.9e-21 105.9 71 60.6
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.9e-21 105.9 67 62.7
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.7e-21 105.5 64 65.6
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.7e-21 105.5 70 65.7
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 3.7e-21 105.5 66 68.2
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 3.7e-21 105.5 71 60.6
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 4.9e-21 105.1 70 61.4
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 4.9e-21 105.1 72 61.1
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 4.9e-21 105.1 70 58.6
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 4.9e-21 105.1 71 60.6
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 6.4e-21 104.8 70 60.0
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.4e-21 104.8 75 64.0
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 8.3e-21 104.4 58 72.4
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.1e-20 104.0 71 59.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.9e-20 103.2 105 47.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.4e-20 102.8 72 61.1
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.2e-20 102.4 62 66.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 3.2e-20 102.4 69 60.9
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.2e-20 102.4 69 62.3
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 3.2e-20 102.4 69 62.3
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.2e-20 102.4 71 62.0
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 3.2e-20 102.4 71 63.4
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 4.1e-20 102.1 67 61.2
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 4.1e-20 102.1 75 62.7
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 5.4e-20 101.7 65 58.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 5.4e-20 101.7 72 61.1
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.0e-20 101.3 68 58.8
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 7.0e-20 101.3 61 62.3
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.0e-20 101.3 71 59.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 9.2e-20 100.9 71 59.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 9.2e-20 100.9 64 62.5
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 9.2e-20 100.9 59 64.4
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 9.2e-20 100.9 71 57.7
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-19 100.5 68 57.4
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.2e-19 100.5 71 57.7
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.2e-19 100.5 63 63.5
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.6e-19 100.1 67 59.7
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.6e-19 100.1 73 58.9
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.6e-19 100.1 62 64.5
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.6e-19 100.1 63 60.3
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.0e-19 99.8 70 54.3
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.7e-19 99.4 71 59.2
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 2.7e-19 99.4 70 58.6
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.5e-19 99.0 58 63.8
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.5e-19 99.0 70 52.9
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.5e-19 99.0 70 52.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 3.5e-19 99.0 63 61.9
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 3.5e-19 99.0 63 61.9
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 4.6e-19 98.6 71 56.3
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 4.6e-19 98.6 72 55.6
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 6.0e-19 98.2 70 55.7
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 7.8e-19 97.8 58 62.1
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.0e-18 97.4 70 57.1
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.0e-18 97.4 57 64.9
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.0e-18 97.4 57 64.9
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.0e-18 97.4 61 63.9
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.3e-18 97.1 70 54.3
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.3e-18 97.1 61 60.7
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.3e-18 97.1 62 61.3
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.7e-18 96.7 63 63.5
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 2.3e-18 96.3 87 47.1
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.3e-18 96.3 87 47.1
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.3e-18 96.3 87 47.1
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.3e-18 96.3 63 63.5
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-18 95.9 58 60.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.0e-18 95.9 58 60.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.0e-18 95.9 70 52.9
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 3.0e-18 95.9 58 60.3
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.0e-18 95.9 70 52.9
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 3.0e-18 95.9 54 66.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 3.0e-18 95.9 57 61.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.9e-18 95.5 56 62.5
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 3.9e-18 95.5 58 62.1
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.0e-18 95.1 61 59.0
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 8.6e-18 94.4 54 64.8
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 8.6e-18 94.4 68 52.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 8.6e-18 94.4 68 52.9
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 8.6e-18 94.4 64 57.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.5e-17 93.6 58 60.3
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-17 93.6 67 52.2
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 5.6e-17 91.7 62 56.5
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.1e-16 89.7 56 55.4
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.1e-16 89.7 59 57.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.8e-15 86.7 49 63.3
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.0e-15 85.5 81 49.4
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.0e-15 85.5 40 82.5
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 2.9e-13 79.3 53 58.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 6.4e-13 78.2 44 63.6
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.7e-11 72.8 64 46.9
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.5e-11 72.4 36 77.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 7.8e-11 71.2 33 81.8
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.0e-10 70.9 35 80.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.6e-10 68.2 48 56.2
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 6.6e-10 68.2 32 84.4
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 6.6e-10 68.2 33 81.8
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 7.3e-09 64.7 35 68.6
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 3.6e-08 62.4 37 62.2
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 6.2e-08 61.6 57 45.6
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-07 60.8 63 44.4
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 6.8e-07 58.2 49 65.3
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.6e-06 56.2 49 44.9
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 9.9e-06 54.3 44 54.5


User provided reference genes

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