Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 4.1e-168 594.7 317 100.0
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 6.1e-132 474.6 311 76.8
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 1.8e-128 463.0 321 73.2
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 9.2e-128 460.7 322 73.9
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 3.4e-74 282.7 291 52.2
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 1.2e-66 257.7 249 51.8
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 4.5e-66 255.8 258 50.4
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 7.6e-66 255.0 249 51.8
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 2.2e-65 253.4 242 52.1
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 5.0e-65 252.3 248 50.8
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 8.5e-65 251.5 249 51.8
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 1.1e-64 251.1 258 50.4
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.4e-64 250.8 246 51.6
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.9e-64 250.4 281 48.8
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 3.2e-64 249.6 246 49.6
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 3.2e-64 249.6 250 50.4
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.6e-63 247.3 281 47.7
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 1.6e-63 247.3 259 49.4
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 4.6e-63 245.7 248 51.6
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.3e-62 244.2 246 48.8
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.8e-62 243.8 253 49.0
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 1.8e-62 243.8 246 48.8
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 3.0e-62 243.0 248 50.4
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 1.1e-61 241.1 246 50.0
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-61 241.1 250 50.0
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.5e-61 240.7 250 50.0
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.5e-61 240.7 250 50.0
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.5e-61 240.7 285 46.3
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.5e-61 240.0 249 49.8
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 5.7e-61 238.8 244 48.0
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 9.7e-61 238.0 243 49.0
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.2e-60 236.9 250 49.6
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.2e-60 236.9 250 49.6
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 3.7e-60 236.1 246 48.8
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 6.3e-60 235.3 248 47.6
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.8e-59 233.8 244 49.2
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 1.8e-59 233.8 244 49.2
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 1.2e-58 231.1 251 47.0
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 1.2e-58 231.1 241 48.1
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.6e-58 229.9 224 51.3
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 4.5e-58 229.2 262 46.9
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.9e-58 228.8 224 51.3
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 2.2e-57 226.9 240 48.3
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 2.9e-57 226.5 256 45.3
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 2.5e-56 223.4 254 45.3
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 5.5e-56 222.2 279 45.2
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 5.5e-56 222.2 249 44.2
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 7.2e-56 221.9 257 44.0
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 7.9e-55 218.4 281 44.5
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 7.9e-55 218.4 253 44.7
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.8e-54 217.2 256 44.5
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 2.3e-54 216.9 249 45.4
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 3.0e-54 216.5 251 42.6
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 3.0e-54 216.5 242 47.1
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 5.1e-54 215.7 241 44.8
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 5.1e-54 215.7 249 45.4
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 5.1e-54 215.7 251 45.0
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 8.8e-54 214.9 305 42.6
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.1e-53 214.5 249 45.0
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 2.0e-53 213.8 250 43.6
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 2.0e-53 213.8 249 45.0
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 2.6e-53 213.4 254 42.5
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 3.3e-53 213.0 250 44.0
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 5.7e-53 212.2 254 43.7
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 2.2e-52 210.3 223 49.3
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 3.7e-52 209.5 267 43.8
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 3.7e-52 209.5 306 41.2
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 6.3e-52 208.8 216 50.0
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 1.1e-51 208.0 258 45.0
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 6.9e-51 205.3 255 41.6
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.5e-50 204.1 190 52.6
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 8.5e-49 198.4 258 40.3
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 7.9e-47 191.8 198 48.5
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 3.3e-45 186.4 171 53.8
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 9.1e-43 178.3 185 49.7
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.6e-42 177.6 185 49.7
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.6e-42 177.6 185 49.7
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.7e-41 174.1 253 38.7
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 2.9e-41 173.3 145 56.6
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 1.4e-35 154.5 180 49.4
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.7e-28 131.0 136 49.3
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 9.8e-13 78.6 106 42.5
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 3.7e-12 76.6 174 29.9


User provided reference genes

Program Settings