Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 7.2e-170 600.5 309 100.0
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.2e-132 476.9 261 95.4
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 9.6e-98 360.9 269 69.9
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 4.5e-71 272.3 272 54.4
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 6.5e-70 268.5 272 52.2
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 3.2e-69 266.2 272 51.8
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.2e-68 264.2 272 54.0
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 3.6e-68 262.7 274 52.6
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 6.1e-68 261.9 263 52.1
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.0e-67 261.2 274 51.1
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.0e-67 261.2 274 51.5
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.4e-67 260.8 265 53.2
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.4e-67 260.8 272 51.8
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 5.2e-67 258.8 269 52.0
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 2.6e-66 256.5 276 51.8
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 5.7e-66 255.4 273 50.2
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 9.7e-66 254.6 272 51.5
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.7e-65 253.8 281 50.9
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.8e-65 253.1 266 52.3
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 4.8e-65 252.3 274 50.7
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 8.2e-65 251.5 274 50.7
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.1e-64 251.1 272 50.7
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 1.4e-64 250.8 273 51.6
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.8e-64 250.4 273 52.0
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 2.4e-64 250.0 264 51.9
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 2.4e-64 250.0 281 49.1
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 5.3e-64 248.8 267 52.4
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 5.3e-64 248.8 280 49.3
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.0e-63 246.9 273 50.2
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.7e-63 246.5 276 49.3
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 2.7e-63 246.5 275 49.1
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 4.5e-63 245.7 273 48.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 4.5e-63 245.7 271 50.2
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 5.9e-63 245.4 274 50.7
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 5.9e-63 245.4 267 51.3
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 5.9e-63 245.4 274 48.5
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 7.7e-63 245.0 267 51.3
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 7.7e-63 245.0 313 47.9
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.7e-62 243.8 270 50.0
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.7e-62 243.8 267 50.9
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.7e-62 243.8 264 50.8
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 2.2e-62 243.4 272 50.4
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 5.0e-62 242.3 274 49.6
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 6.5e-62 241.9 270 49.6
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 6.5e-62 241.9 263 49.0
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 6.5e-62 241.9 272 48.5
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 8.5e-62 241.5 273 49.5
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.9e-61 240.4 273 49.1
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.9e-61 240.4 268 51.1
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 4.2e-61 239.2 267 50.9
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 4.2e-61 239.2 273 47.6
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 5.5e-61 238.8 271 49.1
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 9.4e-61 238.0 267 49.8
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 1.2e-60 237.7 270 48.9
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.6e-60 237.3 275 50.2
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 1.6e-60 237.3 273 47.6
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.6e-60 237.3 272 47.4
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.7e-60 236.5 276 49.6
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 2.7e-60 236.5 274 47.8
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 3.6e-60 236.1 272 48.9
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 6.1e-60 235.3 273 48.4
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 6.1e-60 235.3 280 46.4
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 8.0e-60 235.0 278 46.0
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 8.0e-60 235.0 270 48.9
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 8.0e-60 235.0 270 47.4
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 8.0e-60 235.0 273 49.5
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 1.0e-59 234.6 273 46.9
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 1.8e-59 233.8 245 51.0
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 3.0e-59 233.0 264 50.0
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 4.0e-59 232.6 272 46.7
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 6.8e-59 231.9 269 49.1
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.5e-58 230.7 272 47.1
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 2.0e-58 230.3 273 46.9
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 2.0e-58 230.3 279 45.9
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 2.0e-58 230.3 273 46.9
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 4.4e-58 229.2 269 48.3
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 4.4e-58 229.2 272 47.4
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 7.5e-58 228.4 283 46.3
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 9.8e-58 228.0 272 45.6
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 9.8e-58 228.0 265 50.2
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 1.7e-57 227.3 268 47.0
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 2.8e-57 226.5 278 48.9
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 3.7e-57 226.1 270 47.8
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 3.7e-57 226.1 249 49.0
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 4.8e-57 225.7 270 45.2
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 8.3e-57 224.9 272 46.3
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 1.8e-56 223.8 273 46.2
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 4.1e-56 222.6 273 46.5
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 2.0e-55 220.3 267 46.1
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 1.0e-54 218.0 267 46.4
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.3e-54 217.6 247 49.4
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 6.5e-54 215.3 277 45.8
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 8.5e-54 214.9 271 43.9
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 3.0e-51 206.5 274 43.4
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 5.7e-50 202.2 274 45.6
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.8e-49 199.9 223 51.1
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 4.9e-49 199.1 270 43.7
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 8.3e-49 198.4 238 46.2
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 1.6e-47 194.1 307 40.7
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.6e-44 183.0 184 54.9
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.0e-43 181.4 267 43.1
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 1.4e-43 181.0 260 40.0
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 8.9e-43 178.3 271 41.3
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.7e-41 174.1 274 43.4
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 1.0e-38 164.9 260 39.2
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 2.3e-35 153.7 164 50.0
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 2.3e-35 153.7 260 38.1
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.2e-34 151.4 228 42.1
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 2.2e-33 147.1 264 37.1
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 3.7e-33 146.4 204 41.7
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 3.7e-33 146.4 173 43.9
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 1.1e-29 134.8 146 52.7
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.6e-28 131.0 135 54.1
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.1e-27 128.3 109 58.7
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 5.4e-24 115.9 126 52.4
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.7e-22 110.9 267 33.3
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 6.2e-20 102.4 140 47.1
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 1.8e-19 100.9 264 29.5
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 4.0e-19 99.8 195 36.4
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 4.1e-16 89.7 109 49.5
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 5.6e-13 79.3 168 32.7
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 9.6e-13 78.6 163 38.7
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 3.8e-09 66.6 239 27.6
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 4.2e-08 63.2 113 36.3


User provided reference genes

Program Settings