Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.8e-35 152.1 84 100.0
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 2.6e-21 105.1 78 75.6
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 5.8e-21 104.0 66 86.4
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 5.8e-21 104.0 66 86.4
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.3e-20 102.8 66 86.4
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.2e-20 102.1 65 81.5
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 3.7e-20 101.3 66 84.8
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 4.9e-20 100.9 65 78.5
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 4.9e-20 100.9 65 80.0
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 4.9e-20 100.9 66 81.8
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.9e-20 100.9 65 81.5
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 6.4e-20 100.5 65 80.0
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 6.4e-20 100.5 62 80.6
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 6.4e-20 100.5 65 78.5
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 8.3e-20 100.1 61 83.6
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-19 99.8 65 76.9
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-19 99.8 65 78.5
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.1e-19 99.8 77 74.0
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.1e-19 99.8 61 82.0
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.1e-19 99.8 61 82.0
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.4e-19 99.4 65 76.9
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.4e-19 99.4 65 76.9
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.4e-19 99.4 65 78.5
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.4e-19 99.4 61 80.3
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.4e-19 99.4 61 80.3
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.9e-19 99.0 65 76.9
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.9e-19 99.0 65 78.5
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.9e-19 99.0 65 76.9
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 2.4e-19 98.6 67 79.1
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.4e-19 98.6 65 78.5
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 2.4e-19 98.6 67 76.1
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 3.2e-19 98.2 65 75.4
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 3.2e-19 98.2 65 75.4
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 3.2e-19 98.2 65 78.5
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 3.2e-19 98.2 84 65.5
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.1e-19 97.8 65 76.9
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 5.4e-19 97.4 61 75.4
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 5.4e-19 97.4 65 78.5
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.4e-19 97.4 61 80.3
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 5.4e-19 97.4 66 77.3
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 7.1e-19 97.1 65 75.4
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 7.1e-19 97.1 65 75.4
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 7.1e-19 97.1 82 65.9
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 7.1e-19 97.1 65 75.4
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 9.2e-19 96.7 65 78.5
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 9.2e-19 96.7 65 78.5
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.2e-19 96.7 65 75.4
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 9.2e-19 96.7 65 73.8
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 9.2e-19 96.7 65 76.9
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 9.2e-19 96.7 66 78.8
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.2e-18 96.3 65 73.8
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.2e-18 96.3 61 78.7
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.2e-18 96.3 82 68.3
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.6e-18 95.9 65 76.9
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.1e-18 95.5 65 75.4
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.7e-18 95.1 65 75.4
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 2.7e-18 95.1 65 73.8
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 3.5e-18 94.7 66 78.8
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.5e-18 94.7 77 68.8
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.5e-18 94.7 77 68.8
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 3.5e-18 94.7 65 78.5
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 3.5e-18 94.7 65 78.5
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 3.5e-18 94.7 82 69.5
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.0e-18 94.0 65 75.4
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 6.0e-18 94.0 82 63.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.0e-18 94.0 82 63.4
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.0e-18 94.0 82 63.4
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.0e-18 94.0 82 63.4
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 6.0e-18 94.0 65 73.8
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 7.8e-18 93.6 61 77.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 7.8e-18 93.6 61 80.3
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 75.4
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 72.3
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 70.8
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 73.8
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 72.3
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 75.4
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 75.4
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.0e-17 93.2 65 72.3
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.3e-17 92.8 61 73.8
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.3e-17 92.8 65 72.3
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.3e-17 92.8 65 69.2
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.3e-17 92.8 65 70.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.3e-17 92.8 77 67.5
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.3e-17 92.8 62 75.8
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.3e-17 92.8 65 75.4
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.7e-17 92.4 65 72.3
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.7e-17 92.4 82 61.0
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.7e-17 92.4 65 75.4
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.0e-17 91.7 78 64.1
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 3.9e-17 91.3 61 72.1
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 3.9e-17 91.3 77 64.9
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.1e-17 90.9 61 75.4
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 5.1e-17 90.9 65 69.2
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 5.1e-17 90.9 72 68.1
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 5.1e-17 90.9 61 75.4
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 66.2
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 69.2
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 70.8
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 70.8
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 70.8
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 70.8
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 75.4
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 6.6e-17 90.5 65 73.8
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 8.6e-17 90.1 67 70.1
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.1e-16 89.7 65 69.2
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.5e-16 89.4 65 69.2
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.5e-16 89.4 65 70.8
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.9e-16 89.0 73 65.8
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.9e-16 89.0 65 69.2
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.9e-16 89.0 62 72.6
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.5e-16 88.6 82 61.0
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.5e-16 88.6 82 65.9
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.5e-16 88.6 82 65.9
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.5e-16 88.6 82 65.9
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.5e-16 88.6 66 71.2
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 3.3e-16 88.2 73 65.8
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.3e-16 88.2 65 69.2
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 5.6e-16 87.4 76 65.8
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 5.6e-16 87.4 76 64.5
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 7.3e-16 87.0 55 78.2
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 3.6e-15 84.7 65 67.7
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 4.7e-15 84.3 56 78.6
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.2e-13 79.7 45 86.7
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.2e-13 79.7 62 67.7
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 3.0e-09 65.1 58 60.3
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 3.9e-09 64.7 66 62.1
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.7e-07 57.8 77 48.1


User provided reference genes

Program Settings