Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 9.6e-220 766.5 388 100.0
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.7e-168 596.3 346 87.3
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.4e-140 502.3 302 77.8
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 7.5e-140 501.1 335 72.2
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 9.8e-140 500.7 379 65.7
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 2.8e-139 499.2 367 67.0
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 6.3e-139 498.0 293 77.8
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.4e-138 496.9 291 77.7
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.1e-138 495.7 300 76.7
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 5.4e-138 495.0 335 71.6
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 5.4e-138 495.0 335 71.9
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 9.2e-138 494.2 293 78.2
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 2.0e-137 493.0 382 64.7
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.0e-137 493.0 335 71.3
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 2.7e-137 492.7 288 78.8
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 2.7e-137 492.7 366 67.2
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.7e-137 492.7 345 69.3
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 7.8e-137 491.1 368 68.2
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.3e-136 490.3 284 78.5
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.3e-136 490.3 284 78.5
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 1.3e-136 490.3 375 65.1
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.7e-136 490.0 404 61.9
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.7e-136 490.0 343 68.8
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.9e-136 489.2 284 78.2
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.9e-136 489.2 284 78.5
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 5.0e-136 488.4 329 72.3
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.0e-136 488.4 293 77.1
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 6.6e-136 488.0 333 70.6
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 8.6e-136 487.6 344 70.1
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 1.1e-135 487.3 295 77.3
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.5e-135 486.9 334 71.0
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.5e-135 486.1 294 77.2
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 3.3e-135 485.7 366 66.1
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 5.6e-135 485.0 311 73.3
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 5.6e-135 485.0 300 75.3
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 5.6e-135 485.0 329 71.1
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 5.6e-135 485.0 279 79.2
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 9.5e-135 484.2 371 66.3
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 9.5e-135 484.2 293 76.1
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.6e-134 483.4 302 74.8
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 1.6e-134 483.4 284 77.8
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.6e-134 483.4 335 71.0
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.1e-134 483.0 283 78.1
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 2.8e-134 482.6 310 73.9
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 3.6e-134 482.3 327 70.9
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 3.6e-134 482.3 316 73.4
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 4.7e-134 481.9 297 74.7
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.7e-134 481.9 320 72.5
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 6.1e-134 481.5 347 67.7
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 6.1e-134 481.5 330 70.9
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 8.0e-134 481.1 337 69.4
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 8.0e-134 481.1 305 73.1
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.8e-133 479.9 342 68.4
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.8e-133 479.9 359 66.9
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.8e-133 479.9 305 73.1
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 1.8e-133 479.9 294 75.9
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.3e-133 479.6 293 76.1
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 3.1e-133 479.2 285 78.2
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 6.8e-133 478.0 374 64.7
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 6.8e-133 478.0 336 69.9
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 6.8e-133 478.0 331 71.3
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 8.9e-133 477.6 331 70.1
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 8.9e-133 477.6 331 70.1
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 8.9e-133 477.6 327 70.9
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.5e-132 476.9 330 68.8
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 2.0e-132 476.5 297 74.7
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.6e-132 476.1 332 70.8
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 3.4e-132 475.7 364 65.7
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 4.4e-132 475.3 337 68.2
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 4.4e-132 475.3 393 62.6
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 7.5e-132 474.6 337 67.7
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 9.8e-132 474.2 286 76.2
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 9.8e-132 474.2 347 67.1
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.8e-132 474.2 302 73.8
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.7e-131 473.4 330 70.3
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 1.7e-131 473.4 337 67.4
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 2.2e-131 473.0 373 64.1
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.9e-131 472.6 335 67.5
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 4.9e-131 471.9 295 73.9
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 4.9e-131 471.9 314 71.3
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.4e-130 470.3 354 65.3
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 3.2e-130 469.2 337 68.5
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 5.4e-130 468.4 365 63.8
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 9.2e-130 467.6 354 65.0
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 9.2e-130 467.6 366 64.5
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.0e-129 466.5 367 63.8
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 2.7e-129 466.1 341 68.3
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.5e-129 465.7 367 63.2
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 6.0e-129 464.9 340 68.5
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 6.0e-129 464.9 321 69.5
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 3.0e-128 462.6 370 64.3
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.0e-128 462.6 331 68.9
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 3.9e-128 462.2 282 76.6
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.9e-128 462.2 340 67.6
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 3.9e-128 462.2 316 69.9
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 3.9e-128 462.2 314 70.4
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 7.3e-127 458.0 371 64.2
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 7.3e-127 458.0 371 64.2
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.1e-125 454.1 352 65.3
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.8e-125 453.4 262 78.6
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.8e-125 453.4 329 69.0
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.6e-124 449.5 314 68.8
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.9e-123 446.0 317 68.5
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.4e-122 443.7 334 65.0
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 6.0e-121 438.3 390 60.8
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.3e-120 437.2 347 64.0
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 3.0e-120 436.0 373 60.1
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 8.6e-120 434.5 271 74.2
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.1e-119 434.1 430 54.9
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.1e-118 429.9 294 67.3
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 9.9e-116 421.0 400 56.8
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 8.3e-115 417.9 339 61.7
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.1e-114 417.5 335 64.8
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.2e-110 404.1 276 67.8
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 8.1e-110 401.4 275 67.3
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 4.9e-107 392.1 332 60.8
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 2.1e-105 386.7 225 78.2
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 2.7e-105 386.3 349 56.7
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 3.1e-101 372.9 214 79.4
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 2.9e-99 366.3 352 55.4
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 2.5e-87 326.6 237 70.9
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 6.2e-86 322.0 178 77.5
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 1.0e-80 304.7 361 49.6
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.0e-75 288.1 295 51.9
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.9e-67 260.0 143 79.0
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 4.8e-62 242.7 140 74.3
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 1.4e-61 241.1 146 78.8
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 4.5e-44 183.0 173 57.8
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 8.0e-41 172.2 121 73.6
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 1.5e-39 167.9 120 70.8
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.0e-36 157.5 191 44.5
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.2e-35 154.1 93 69.9
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 2.6e-31 140.6 165 45.5
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.7e-27 127.9 84 72.6
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 6.6e-27 125.9 123 59.3
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 6.8e-24 115.9 60 81.7
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 8.9e-24 115.5 61 82.0
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.7e-22 111.3 72 75.0
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.2e-21 107.1 65 75.4
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 5.4e-21 106.3 140 50.0
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 5.4e-21 106.3 71 73.2
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.2e-14 84.3 66 59.1
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.7e-12 77.4 42 76.2
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 5.8e-07 59.7 48 54.2


User provided reference genes

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