Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0155300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.4e-218 762.7 380 100.0
Os11g0166100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.3e-61 240.4 383 39.9
Os10g0137000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 8.9e-45 185.3 369 37.1
Os05g0320100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 6.0e-41 172.6 373 35.7
Zm00001eb346560 Zea mays HOM05D008694 ORTHO05D010635 1.3e-40 171.4 368 33.4
Os10g0145200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.3e-40 170.6 366 34.7
Os10g0136200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.3e-39 166.8 372 34.4
Os02g0249700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 9.5e-39 165.2 376 33.0
Os10g0137700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.0e-36 157.5 393 32.1
Os10g0142500 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.6e-36 157.1 362 32.3
Os10g0145000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 7.8e-33 145.6 370 31.9
Zm00001eb285670 Zea mays HOM05D008694 ORTHO05D010635 7.3e-31 139.0 405 32.1
Os10g0145100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 9.0e-29 132.1 379 31.1
Zm00001eb298860 Zea mays HOM05D008694 ORTHO05D010635 9.0e-29 132.1 375 30.9
Os07g0120200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 7.6e-28 129.0 365 32.3
Os07g0120400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.9e-27 127.1 363 30.3
Zm00001eb043870 Zea mays HOM05D008694 ORTHO05D010635 5.4e-26 122.9 384 31.2
Os07g0122900 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.6e-25 119.8 369 33.6
Zm00001eb332480 Zea mays HOM05D008694 ORTHO05D010635 6.0e-25 119.4 368 32.1
Os10g0139300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.1e-24 116.3 397 27.7
Zm00001eb043880 Zea mays HOM05D008694 ORTHO05D010635 4.3e-23 113.2 388 30.9
Zm00001eb028860 Zea mays HOM05D008694 ORTHO05D010635 2.1e-22 110.9 382 29.8
Zm00001eb302490 Zea mays HOM05D008694 ORTHO05D010635 1.4e-21 108.2 372 29.6
Os07g0123000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.1e-21 107.1 377 28.9
Os01g0557400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.6e-20 104.0 376 31.9
Os07g0421000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.9e-18 97.8 382 28.8
Os10g0144800 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 7.1e-18 95.9 382 27.5
Os10g0136150 Oryza sativa ssp. japonica HOM05D008243 ORTHO05D017094 1.0e-16 92.0 187 29.9
Zm00001eb042100 Zea mays HOM05D028964 ORTHO05D010635 1.8e-16 91.3 335 31.0
Os10g0138000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.9e-16 90.1 163 39.9
Os10g0138600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.6e-14 84.7 329 27.4
Os10g0138300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.4e-13 81.6 424 23.3
Os10g0188000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.4e-13 81.6 206 34.0
COL.COLO4_19852 Corchorus olitorius HOM05D002420 ORTHO05D002422 3.1e-13 80.5 309 23.6
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 5.3e-13 79.7 316 24.4
Os10g0123200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 9.0e-13 79.0 130 40.8
Zm00001eb299080 Zea mays HOM05D062505 ORTHO05D010635 9.0e-13 79.0 395 26.8
Zm00001eb161470 Zea mays HOM05D028964 ORTHO05D049742 1.0e-11 75.5 334 25.1
Rhsim10G0188800 Rhododendron simsii HOM05D002420 ORTHO05D002422 1.7e-11 74.7 327 24.5
Thecc.09G282200 Theobroma cacao HOM05D002420 ORTHO05D002422 1.7e-11 74.7 298 24.8
Nitab4.5_0011101g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 4.9e-11 73.2 242 28.9
Os08g0299700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.9e-11 73.2 186 36.0
Nitab4.5_0000413g0120 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.1e-10 72.0 241 29.9
Atru.chr9.129 Acer truncatum HOM05D002420 ORTHO05D002422 1.4e-10 71.6 320 24.1
ClCG01G004670 Citrullus lanatus HOM05D000664 ORTHO05D000491 1.4e-10 71.6 244 29.1
Os01g0509900 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D010635 1.9e-10 71.2 312 27.2
Duzib168G0815 Durio zibethinus HOM05D002420 ORTHO05D002422 7.1e-10 69.3 300 24.3
MELO3C005495.2 Cucumis melo HOM05D000664 ORTHO05D000491 9.3e-10 68.9 240 27.5
Peaxi162Scf00320g00071 Petunia axillaris HOM05D000664 ORTHO05D000491 9.3e-10 68.9 323 25.1
Actinidia35149 Actinidia chinensis HOM05D002420 ORTHO05D002422 3.5e-09 67.0 334 23.1
Migut.O00261 Erythranthe guttata HOM05D002420 ORTHO05D002422 4.6e-09 66.6 335 24.2
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 4.6e-09 66.6 354 22.9
arahy.Tifrunner.gnm1.ann1.DL8VF6 Arachis hypogaea HOM05D007779 ORTHO05D009863 6.0e-09 66.2 293 26.3
MD12G1244700 Malus domestica HOM05D007779 ORTHO05D009863 6.0e-09 66.2 292 25.7
Duzib177G1156 Durio zibethinus HOM05D000664 ORTHO05D000491 7.9e-09 65.9 267 24.7
Os02g0294100 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D036983 1.0e-08 65.5 339 27.1
Migut.M00586 Erythranthe guttata HOM05D002420 ORTHO05D002422 1.8e-08 64.7 335 24.8
Migut.O00341 Erythranthe guttata HOM05D002420 ORTHO05D002422 1.8e-08 64.7 335 24.8
Os07g0554500 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D293036 3.0e-08 63.9 295 27.1
PGSC0003DMG400029956 Solanum tuberosum HOM05D000664 ORTHO05D000491 3.0e-08 63.9 242 27.3
HanXRQChr03g0067811 Helianthus annuus HOM05D000664 ORTHO05D000491 3.9e-08 63.5 315 26.3
Os07g0517700 Oryza sativa ssp. japonica HOM05D028964 ORTHO05D049742 3.9e-08 63.5 336 25.6
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 6.7e-08 62.8 353 22.9
Sopen07g005630 Solanum pennellii HOM05D000664 ORTHO05D000491 1.5e-07 61.6 248 25.8
Nitab4.5_0000413g0140 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.9e-07 61.2 261 26.4
Zm00001eb299160 Zea mays HOM05D008694 ORTHO05D010635 1.9e-07 61.2 104 38.5
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.5e-07 60.8 322 23.6
Solyc07g015800.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 2.5e-07 60.8 251 25.9
TAR626G1797 Trochodendron aralioides HOM05D000664 ORTHO05D000491 4.3e-07 60.1 302 23.5
Zm00001eb299040 Zea mays HOM05D062505 ORTHO05D010635 4.3e-07 60.1 387 24.8
Lj1g0005336 Lotus japonicus HOM05D007779 ORTHO05D009863 5.7e-07 59.7 259 29.7
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 5.7e-07 59.7 306 21.6
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 9.6e-07 58.9 162 25.3
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 1.6e-06 58.2 233 25.3
Os02g0287800 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 1.6e-06 58.2 58 56.9
Os10g0139600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.1e-06 57.8 45 66.7
Cc06_g22190 Coffea canephora HOM05D000664 ORTHO05D000491 2.8e-06 57.4 327 23.5
Manes.14G038100 Manihot esculenta HOM05D000664 ORTHO05D000491 2.8e-06 57.4 261 23.4
Cc06_g22370 Coffea canephora HOM05D000664 ORTHO05D000491 6.2e-06 56.2 234 24.4
Os02g0288000 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 6.2e-06 56.2 56 57.1
Os07g0554900 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D010635 6.2e-06 56.2 164 32.9
Rhsim07G0210200 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.2e-06 55.8 262 22.5


User provided reference genes

Program Settings