Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0150300 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 2.2e-95 352.4 197 100.0
Os10g0150700 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.9e-51 206.5 165 70.3
Os10g0150400 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 2.8e-50 202.6 165 69.1
Os10g0150800 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 8.1e-50 201.1 165 67.9
Os10g0150600 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 2.4e-49 199.5 165 67.9
Zm00001eb026530 Zea mays HOM05D003311 ORTHO05D003707 3.2e-46 189.1 205 61.0
Zm00001eb026500 Zea mays HOM05D003311 ORTHO05D003707 2.1e-45 186.4 157 66.2
Os10g0148100 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.0e-39 167.5 167 59.9
Os10g0148700 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.3e-39 167.2 183 55.7
Os10g0149000 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.1e-33 147.5 178 56.7
Os10g0149800 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 5.3e-33 145.2 176 57.4
Os10g0149200 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 6.9e-33 144.8 183 54.6
Os10g0149400 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 7.7e-32 141.4 162 56.2
Zm00001eb026460 Zea mays HOM05D003311 ORTHO05D003707 1.0e-31 141.0 174 52.3
Os03g0245200 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 8.5e-31 137.9 150 54.0
Os07g0484900 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.4e-30 137.1 77 88.3
Zm00001eb010490 Zea mays HOM05D003311 ORTHO05D003707 8.8e-28 127.9 175 48.0
Zm00001eb398790 Zea mays HOM05D003311 ORTHO05D003707 3.4e-24 115.9 139 52.5
Cfa005186 Carpinus fangiana HOM05D003311 ORTHO05D003707 2.7e-13 79.7 153 38.6
Eucgr.L01869 Eucalyptus grandis HOM05D003311 ORTHO05D003707 3.6e-13 79.3 145 39.3
Glyma.04G005400 Glycine max HOM05D003311 ORTHO05D003707 6.1e-13 78.6 142 38.7
Actinidia00597 Actinidia chinensis HOM05D003311 ORTHO05D003707 1.0e-12 77.8 167 35.3
Os03g0245300 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.8e-12 77.0 166 39.8
MBI09_g00986_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 3.0e-12 76.3 124 41.1
Phvul.011G026700 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 5.2e-12 75.5 176 38.6
Lj9A389T67 Lonicera japonica HOM05D003311 ORTHO05D003707 6.7e-12 75.1 122 43.4
VMungo1309G0179 Vigna mungo HOM05D003311 ORTHO05D003707 6.7e-12 75.1 145 37.2
HanXRQChr10g0294871 Helianthus annuus HOM05D003311 ORTHO05D003707 8.8e-12 74.7 179 35.2
Os10g0149100 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 1.5e-11 73.9 109 49.5
GSVIVG01024081001 Vitis vinifera HOM05D003311 ORTHO05D003707 1.5e-11 73.9 140 37.9
Atru.chr5.3229 Acer truncatum HOM05D003311 ORTHO05D003707 3.3e-11 72.8 150 32.7
CiPaw.06G125100 Carya illinoinensis HOM05D003311 ORTHO05D003707 3.3e-11 72.8 148 37.8
Dinv04967 Davidia involucrata HOM05D003311 ORTHO05D003707 5.7e-11 72.0 147 38.1
Lj3g0005308 Lotus japonicus HOM05D003311 ORTHO05D003707 5.7e-11 72.0 147 34.7
CiPaw.05G077500 Carya illinoinensis HOM05D003311 ORTHO05D003707 7.4e-11 71.6 126 38.9
Sabra04G0113000 Salix brachista HOM05D003311 ORTHO05D003707 1.3e-10 70.9 159 35.8
TPR.G17164 Trifolium pratense HOM05D003311 ORTHO05D003707 1.3e-10 70.9 160 35.0
Ca_19004_v3 Cicer arietinum L. HOM05D003311 ORTHO05D003707 1.7e-10 70.5 134 38.8
HanXRQChr07g0186871 Helianthus annuus HOM05D003311 ORTHO05D003707 1.7e-10 70.5 158 33.5
Sed0022693 Sechium edule HOM05D003311 ORTHO05D003707 1.7e-10 70.5 159 36.5
Sabra09G0099300 Salix brachista HOM05D003311 ORTHO05D003707 2.2e-10 70.1 140 35.0
HPP92_022646 Vanilla planifolia HOM05D003311 ORTHO05D003707 2.2e-10 70.1 140 34.3
Thecc.02G066700 Theobroma cacao HOM05D003311 ORTHO05D003707 2.8e-10 69.7 170 36.5
ECA234G1895 Erigeron canadensis HOM05D003311 ORTHO05D003707 3.7e-10 69.3 161 35.4
MD05G1116400 Malus domestica HOM05D003311 ORTHO05D003707 4.8e-10 68.9 149 36.2
CSS0033713 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 6.3e-10 68.6 149 35.6
Sc08g0003160 Simmondsia chinensis HOM05D003311 ORTHO05D003707 6.3e-10 68.6 188 34.0
CsaV3_7G000820 Cucumis sativus L. HOM05D000144 ORTHO05D003707 8.2e-10 68.2 147 33.3
Potri.009G129900 Populus trichocarpa HOM05D003311 ORTHO05D003707 1.4e-09 67.4 148 35.1
Lsat_1_v5_gn_3_45680 Lactuca sativa HOM05D003311 ORTHO05D003707 2.4e-09 66.6 146 34.9
Eucgr.I01377 Eucalyptus grandis HOM05D003311 ORTHO05D003707 4.1e-09 65.9 129 34.9
Nn5g29097 Nelumbo nucifera HOM05D003311 ORTHO05D003707 4.1e-09 65.9 148 33.1
AUR62010091 Chenopodium quinoa HOM05D003311 ORTHO05D003707 5.3e-09 65.5 155 34.8
PGSC0003DMG400001243 Solanum tuberosum HOM05D003311 ORTHO05D003707 5.3e-09 65.5 124 37.1
Medtr4g075333 Medicago truncatula HOM05D003311 ORTHO05D003707 7.0e-09 65.1 154 34.4
QL11p047628 Quercus lobata HOM05D003311 ORTHO05D003707 7.0e-09 65.1 154 37.0
Peaxi162Scf00538g00520 Petunia axillaris HOM05D003311 ORTHO05D003707 1.6e-08 63.9 154 32.5
TWI79G0740 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 1.6e-08 63.9 149 34.2
AUR62013087 Chenopodium quinoa HOM05D003311 ORTHO05D003707 2.6e-08 63.2 175 35.4
MELO3C013376.2 Cucumis melo HOM05D003311 ORTHO05D003707 2.6e-08 63.2 96 39.6
Peaxi162Scf00362g00962 Petunia axillaris HOM05D003311 ORTHO05D003707 3.5e-08 62.8 193 31.6
Hund00043 Selenicereus undatus HOM05D003311 ORTHO05D003707 3.5e-08 62.8 144 37.5
TWI75G0647 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 3.5e-08 62.8 159 34.0
Ah.01g009150 Amaranthus hybridus HOM05D003396 ORTHO05D003646 4.5e-08 62.4 124 35.5
Prupe.8G160900 Prunus persica HOM05D003311 ORTHO05D003707 4.5e-08 62.4 143 35.7
TAR376G0773 Trochodendron aralioides HOM05D003311 ORTHO05D003707 4.5e-08 62.4 168 34.5
Haze_02195 Corylus avellana HOM05D003311 ORTHO05D003707 5.9e-08 62.0 145 35.9
Nitab4.5_0013889g0010 Nicotiana tabacum HOM05D003311 ORTHO05D003707 7.7e-08 61.6 145 36.6
PSO170G2430 Papaver somniferum HOM05D003311 ORTHO05D003707 1.0e-07 61.2 165 32.1
Sopen10g024830 Solanum pennellii HOM05D003311 ORTHO05D003707 1.3e-07 60.8 157 33.8
TAR628G0207 Trochodendron aralioides HOM05D003311 ORTHO05D003707 1.7e-07 60.5 175 33.7
MELO3C020785.2 Cucumis melo HOM05D003311 ORTHO05D003707 3.8e-07 59.3 138 34.1
Nitab4.5_0000956g0190 Nicotiana tabacum HOM05D003311 ORTHO05D003707 3.8e-07 59.3 151 35.8
MSTRG.16857 Avicennia marina HOM05D003311 ORTHO05D003707 5.0e-07 58.9 116 39.7
CsaV3_2G015730 Cucumis sativus L. HOM05D003311 ORTHO05D003707 5.0e-07 58.9 138 34.8
PSO700G0002 Papaver somniferum HOM05D003311 ORTHO05D003707 5.0e-07 58.9 165 30.3
Psat7g138320 Pisum sativum HOM05D003311 ORTHO05D003707 5.0e-07 58.9 104 37.5
Solyc10g054900.2 Solanum lycopersicum HOM05D003311 ORTHO05D003707 5.0e-07 58.9 157 34.4
Os10g0150000 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 6.5e-07 58.5 117 51.3
Sopen10g024820 Solanum pennellii HOM05D003311 ORTHO05D003707 8.5e-07 58.2 157 33.8
PGSC0003DMG400004441 Solanum tuberosum HOM05D003311 ORTHO05D003707 8.5e-07 58.2 148 33.1
unitig_37.g12824 Utricularia gibba HOM05D003311 ORTHO05D003707 1.1e-06 57.8 104 45.2
QL04p095545 Quercus lobata HOM05D003311 ORTHO05D003707 1.5e-06 57.4 79 44.3
ClCG02G011360 Citrullus lanatus HOM05D003311 ORTHO05D003707 3.2e-06 56.2 163 30.1
ClCG02G011540 Citrullus lanatus HOM05D003311 ORTHO05D003707 3.2e-06 56.2 163 30.1
Nn1g05901 Nelumbo nucifera HOM05D003311 ORTHO05D003707 7.2e-06 55.1 176 31.8


User provided reference genes

Program Settings