Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0140900 Oryza sativa ssp. japonica HOM05D003285 ORTHO05D003740 5.7e-45 183.7 83 100.0
Zm00001eb369200 Zea mays HOM05D003285 ORTHO05D003740 5.2e-14 80.9 86 51.2
AL5G44600 Arabidopsis lyrata HOM05D003285 ORTHO05D003740 5.4e-11 70.9 81 45.7
Zm00001eb152730 Zea mays HOM05D003285 ORTHO05D003740 7.0e-11 70.5 43 72.1
BcaC07g42624 Brassica carinata HOM05D003285 ORTHO05D003740 9.1e-11 70.1 82 47.6
Ciclev10022908m.g Citrus clementina HOM05D003285 ORTHO05D003740 3.5e-10 68.2 82 45.1
BcaC07g40695 Brassica carinata HOM05D003285 ORTHO05D003740 5.9e-10 67.4 81 46.9
C08p36940 Brassica napus HOM05D003285 ORTHO05D003740 5.9e-10 67.4 81 46.9
BolC8t51270H Brassica oleracea HOM05D003285 ORTHO05D003740 5.9e-10 67.4 81 46.9
BraA09t40819Z Brassica rapa HOM05D003285 ORTHO05D003740 5.9e-10 67.4 81 46.9
Thhalv10006320m.g Eutrema salsugineum HOM05D003285 ORTHO05D003740 5.9e-10 67.4 81 46.9
Carub.0005s2874 Capsella rubella HOM05D003285 ORTHO05D003740 7.7e-10 67.0 71 47.9
AT3G61980 Arabidopsis thaliana HOM05D003285 ORTHO05D003740 1.7e-09 65.9 81 42.0
Atru.chr5.808 Acer truncatum HOM05D003285 ORTHO05D003740 2.2e-09 65.5 76 46.1
A09p54050 Brassica napus HOM05D003285 ORTHO05D003740 2.2e-09 65.5 71 47.9
Sabra02G0132500 Salix brachista HOM05D003285 ORTHO05D003740 2.2e-09 65.5 83 47.0
Gohir.A11G102600 Gossypium hirsutum HOM05D003285 ORTHO05D003740 2.9e-09 65.1 61 54.1
Gohir.D11G107100 Gossypium hirsutum HOM05D003285 ORTHO05D003740 6.5e-09 63.9 78 46.2
Gorai.007G114700 Gossypium raimondii HOM05D003285 ORTHO05D003740 6.5e-09 63.9 78 46.2
CARHR172340 Cardamine hirsuta HOM05D003285 ORTHO05D003740 1.1e-08 63.2 76 40.8
Oeu055416.1 Olea europaea HOM05D003285 ORTHO05D003740 1.5e-08 62.8 80 45.0
Rhsim03G0217700 Rhododendron simsii HOM05D003285 ORTHO05D003740 1.5e-08 62.8 40 70.0
VMungo0860G0001 Vigna mungo HOM05D003285 ORTHO05D003740 1.5e-08 62.8 68 47.1
Glyma.02G221700 Glycine max HOM05D003285 ORTHO05D003740 1.9e-08 62.4 75 49.3
Nn7g38272 Nelumbo nucifera HOM05D003285 ORTHO05D003740 1.9e-08 62.4 39 66.7
Potri.002G182800 Populus trichocarpa HOM05D003285 ORTHO05D003740 1.9e-08 62.4 83 44.6
THA.LOC104802105 Tarenaya hassleriana HOM05D003285 ORTHO05D003740 1.9e-08 62.4 70 45.7
CiPaw.06G038900 Carya illinoinensis HOM05D003285 ORTHO05D003740 2.5e-08 62.0 39 61.5
Ca_05536_v3 Cicer arietinum L. HOM05D003285 ORTHO05D003740 3.2e-08 61.6 39 66.7
LjContig00155g0008247 Lotus japonicus HOM05D003285 ORTHO05D003740 3.2e-08 61.6 68 50.0
HPP92_015067 Vanilla planifolia HOM05D003285 ORTHO05D003740 3.2e-08 61.6 85 44.7
COL.COLO4_23077 Corchorus olitorius HOM05D003285 ORTHO05D003740 4.2e-08 61.2 78 46.2
Duzib138G1807 Durio zibethinus HOM05D003285 ORTHO05D003740 4.2e-08 61.2 78 46.2
Glyma.14G189000 Glycine max HOM05D003285 ORTHO05D003740 4.2e-08 61.2 68 50.0
Gohir.A12G118000 Gossypium hirsutum HOM05D003285 ORTHO05D003740 4.2e-08 61.2 78 46.2
Gohir.D12G121700 Gossypium hirsutum HOM05D003285 ORTHO05D003740 4.2e-08 61.2 78 46.2
Potri.014G108600 Populus trichocarpa HOM05D003285 ORTHO05D003740 4.2e-08 61.2 83 43.4
THA.LOC104825916 Tarenaya hassleriana HOM05D003285 ORTHO05D003740 4.2e-08 61.2 68 48.5
TAR629G1225 Trochodendron aralioides HOM05D003285 ORTHO05D003740 4.2e-08 61.2 73 43.8
CSS0001679 Camellia sinensis var. sinensis HOM05D003285 ORTHO05D003740 5.5e-08 60.8 50 56.0
Cfa016138 Carpinus fangiana HOM05D003285 ORTHO05D003740 5.5e-08 60.8 37 70.3
Duzib133G1556 Durio zibethinus HOM05D003285 ORTHO05D003740 5.5e-08 60.8 78 44.9
Gorai.008G132600 Gossypium raimondii HOM05D003285 ORTHO05D003740 5.5e-08 60.8 78 44.9
Pp3c11_15940 Physcomitrium patens HOM05D003285 ORTHO05D003740 5.5e-08 60.8 78 39.7
CSS0006312 Camellia sinensis var. sinensis HOM05D003285 ORTHO05D003740 7.2e-08 60.5 40 67.5
MD01G1231000 Malus domestica HOM05D003285 ORTHO05D003740 7.2e-08 60.5 53 52.8
Phvul.007G085900 Phaseolus vulgaris HOM05D003285 ORTHO05D003740 7.2e-08 60.5 68 48.5
RcHm_v2.0_Chr2g0157141 Rosa chinensis HOM05D003285 ORTHO05D003740 7.2e-08 60.5 69 43.5
Thecc.01G330000 Theobroma cacao HOM05D003285 ORTHO05D003740 7.2e-08 60.5 78 46.2
CDE11G0266 Ceratophyllum demersum HOM05D003285 ORTHO05D003740 9.4e-08 60.1 82 43.9
Lj1C1030T12 Lonicera japonica HOM05D003285 ORTHO05D003740 9.4e-08 60.1 33 72.7
Medtr5g068760 Medicago truncatula HOM05D003285 ORTHO05D003740 9.4e-08 60.1 76 44.7
TPR.G27920 Trifolium pratense HOM05D003285 ORTHO05D003740 9.4e-08 60.1 76 44.7
Migut.F00970 Erythranthe guttata HOM05D003285 ORTHO05D003740 1.2e-07 59.7 37 67.6
Medtr3g093240 Medicago truncatula HOM05D003285 ORTHO05D003740 1.2e-07 59.7 68 47.1
Nitab4.5_0004582g0030 Nicotiana tabacum HOM05D003285 ORTHO05D003740 1.2e-07 59.7 61 52.5
SalBow2G0415 Salvia bowleyana HOM05D003285 ORTHO05D003740 1.2e-07 59.7 76 43.4
SalBow7G2502 Salvia bowleyana HOM05D003285 ORTHO05D003740 1.2e-07 59.7 76 43.4
PGSC0003DMG400027024 Solanum tuberosum HOM05D003285 ORTHO05D003740 1.2e-07 59.7 69 47.8
CiPaw.05G208100 Carya illinoinensis HOM05D003285 ORTHO05D003740 1.6e-07 59.3 33 69.7
Dinv17284 Davidia involucrata HOM05D003285 ORTHO05D003740 1.6e-07 59.3 36 69.4
MD17G1110400 Malus domestica HOM05D003285 ORTHO05D003740 1.6e-07 59.3 54 51.9
Psat2g061520 Pisum sativum HOM05D003285 ORTHO05D003740 1.6e-07 59.3 39 61.5
PGR142G3185 Punica granatum HOM05D003285 ORTHO05D003740 1.6e-07 59.3 40 62.5
SalBow4G0988 Salvia bowleyana HOM05D003285 ORTHO05D003740 1.6e-07 59.3 76 43.4
THA.LOC104801338 Tarenaya hassleriana HOM05D003285 ORTHO05D003740 1.6e-07 59.3 75 45.3
VMungo1309G2970 Vigna mungo HOM05D003285 ORTHO05D003740 1.6e-07 59.3 40 67.5
MSTRG.8551 Avicennia marina HOM05D003285 ORTHO05D003740 2.1e-07 58.9 76 43.4
Ca_16834_v3 Cicer arietinum L. HOM05D003285 ORTHO05D003740 2.1e-07 58.9 33 72.7
FvH4_6g41470 Fragaria vesca HOM05D003285 ORTHO05D003740 2.1e-07 58.9 69 42.0
FAN02G2748 Fragaria x ananassa HOM05D003285 ORTHO05D003740 2.1e-07 58.9 69 42.0
FAN05G2811 Fragaria x ananassa HOM05D003285 ORTHO05D003740 2.1e-07 58.9 69 42.0
FAN05G5244 Fragaria x ananassa HOM05D003285 ORTHO05D003740 2.1e-07 58.9 69 42.0
FAN09G4844 Fragaria x ananassa HOM05D003285 ORTHO05D003740 2.1e-07 58.9 69 42.0
FAN14G1926 Fragaria x ananassa HOM05D003285 ORTHO05D000521 2.1e-07 58.9 69 42.0
Gohir.D07G137400 Gossypium hirsutum HOM05D003285 ORTHO05D003740 2.1e-07 58.9 61 47.5
Prupe.2G321500 Prunus persica HOM05D003285 ORTHO05D003740 2.1e-07 58.9 35 68.6
Aa31LG10G15970 Aethionema arabicum HOM05D003285 ORTHO05D003740 2.7e-07 58.5 33 69.7
Cc03_g11320 Coffea canephora HOM05D003285 ORTHO05D003740 2.7e-07 58.5 33 72.7
MELO3C024848.2 Cucumis melo HOM05D003285 ORTHO05D003740 2.7e-07 58.5 71 42.3
MBI12_g26902_MAGBIO Magnolia biondii HOM05D003285 ORTHO05D003740 2.7e-07 58.5 33 75.8
MD07G1302300 Malus domestica HOM05D003285 ORTHO05D003740 2.7e-07 58.5 35 68.6
Phvul.009G039700 Phaseolus vulgaris HOM05D003285 ORTHO05D003740 2.7e-07 58.5 33 72.7
TWI14G0442 Tripterygium wilfordii HOM05D003285 ORTHO05D003740 2.7e-07 58.5 67 46.3
unitig_90.g27504 Utricularia gibba HOM05D003285 ORTHO05D003740 2.7e-07 58.5 45 55.6
vmacro10170 Vaccinium macrocarpon HOM05D003285 ORTHO05D003740 2.7e-07 58.5 33 72.7
Gohir.A07G133000 Gossypium hirsutum HOM05D003285 ORTHO05D003740 3.6e-07 58.2 61 47.5
Gorai.001G149500 Gossypium raimondii HOM05D003285 ORTHO05D003740 3.6e-07 58.2 61 47.5
Pp3c10_17540 Physcomitrium patens HOM05D003285 ORTHO05D003740 3.6e-07 58.2 46 52.2
Ah.13g070960 Amaranthus hybridus HOM05D003285 ORTHO05D003740 4.7e-07 57.8 42 59.5
CAN.G65.145 Capsicum annuum HOM05D003285 ORTHO05D003740 4.7e-07 57.8 33 69.7
DCAR_009103 Daucus carota HOM05D003285 ORTHO05D003740 4.7e-07 57.8 34 70.6
Sc13g0010640 Simmondsia chinensis HOM05D003285 ORTHO05D003740 4.7e-07 57.8 33 69.7
Solyc06g073020.3 Solanum lycopersicum HOM05D003285 ORTHO05D003740 4.7e-07 57.8 33 69.7
Sopen06g029370 Solanum pennellii HOM05D003285 ORTHO05D003740 4.7e-07 57.8 33 69.7
SGA_v2.0_scaffold165G38207 Striga asiatica HOM05D003285 ORTHO05D003740 4.7e-07 57.8 66 45.5
Haze_00324 Corylus avellana HOM05D003285 ORTHO05D003740 6.1e-07 57.4 82 41.5
MBI05_g43774_MAGBIO Magnolia biondii HOM05D003285 ORTHO05D003740 6.1e-07 57.4 33 69.7
Prupe.3G204600 Prunus persica HOM05D003285 ORTHO05D003740 6.1e-07 57.4 71 42.3
Psat5g070680 Pisum sativum HOM05D003285 ORTHO05D003740 8.0e-07 57.0 33 69.7
Potri.015G001800 Populus trichocarpa HOM05D003285 ORTHO05D003740 8.0e-07 57.0 33 69.7
Lalb_Chr04g0252531 Lupinus albus HOM05D003285 ORTHO05D003740 1.0e-06 56.6 74 43.2
MD09G1119600 Malus domestica HOM05D003285 ORTHO05D003740 1.0e-06 56.6 73 41.1
PSO782G3038 Papaver somniferum HOM05D003285 ORTHO05D003740 1.0e-06 56.6 33 69.7
QL05p047742 Quercus lobata HOM05D003285 ORTHO05D003740 1.0e-06 56.6 39 61.5
Solyc03g080040.1 Solanum lycopersicum HOM05D003285 ORTHO05D003740 1.0e-06 56.6 69 43.5
Eucgr.A00973 Eucalyptus grandis HOM05D003285 ORTHO05D003740 1.4e-06 56.2 76 42.1
Lj1g0024603 Lotus japonicus HOM05D003285 ORTHO05D003740 1.4e-06 56.2 33 69.7
PSO384G5091 Papaver somniferum HOM05D003285 ORTHO05D003740 1.4e-06 56.2 33 69.7
SalBow4G2464 Salvia bowleyana HOM05D003285 ORTHO05D003740 1.4e-06 56.2 69 44.9
Aa31LG5G1300 Aethionema arabicum HOM05D003285 ORTHO05D003740 1.8e-06 55.8 80 41.2
Ciclev10024059m.g Citrus clementina HOM05D003285 ORTHO05D003740 1.8e-06 55.8 43 55.8
DCAR_026758 Daucus carota HOM05D003285 ORTHO05D003740 1.8e-06 55.8 33 69.7
Manes.01G237800 Manihot esculenta HOM05D003285 ORTHO05D003740 1.8e-06 55.8 33 66.7
Manes.07G094100 Manihot esculenta HOM05D003285 ORTHO05D003740 1.8e-06 55.8 33 66.7
QL09p006144 Quercus lobata HOM05D003285 ORTHO05D003740 1.8e-06 55.8 33 66.7
SMO143G0107 Selaginella moellendorffii HOM05D003285 ORTHO05D003740 1.8e-06 55.8 46 54.3
BcaB01g02372 Brassica carinata HOM05D003285 ORTHO05D003740 2.3e-06 55.5 38 60.5
BcaB01g02373 Brassica carinata HOM05D003285 ORTHO05D003740 2.3e-06 55.5 38 60.5
BcaC01g06810 Brassica carinata HOM05D003285 ORTHO05D003740 2.3e-06 55.5 38 60.5
A03p31560 Brassica napus HOM05D003285 ORTHO05D003740 2.3e-06 55.5 38 60.5
C03p38540 Brassica napus HOM05D003285 ORTHO05D003740 2.3e-06 55.5 38 60.5
BolC3t16127H Brassica oleracea HOM05D003285 ORTHO05D003740 2.3e-06 55.5 38 60.5
BraA03t12334Z Brassica rapa HOM05D003285 ORTHO05D003740 2.3e-06 55.5 38 60.5
Pp3c3_25910 Physcomitrium patens HOM05D003285 ORTHO05D003740 2.3e-06 55.5 39 56.4
Sed0005285 Sechium edule HOM05D003285 ORTHO05D003740 2.3e-06 55.5 71 42.3
CANSAT21G0620 Cannabis sativa HOM05D003285 ORTHO05D003740 3.0e-06 55.1 44 54.5
Lalb_Chr08g0239451 Lupinus albus HOM05D003285 ORTHO05D003740 3.0e-06 55.1 46 54.3
Manes.05G005700 Manihot esculenta HOM05D003285 ORTHO05D003740 3.0e-06 55.1 33 69.7
Manes.07G094200 Manihot esculenta HOM05D003285 ORTHO05D003740 3.0e-06 55.1 33 66.7
Oeu000711.1 Olea europaea HOM05D003285 ORTHO05D003740 3.0e-06 55.1 38 60.5
Oeu062810.1 Olea europaea HOM05D003285 ORTHO05D003740 3.0e-06 55.1 34 67.6
Sabra15G0001100 Salix brachista HOM05D003285 ORTHO05D003740 3.0e-06 55.1 68 41.2
ATR0824G057 Amborella trichopoda HOM05D003285 ORTHO05D003740 4.0e-06 54.7 35 65.7
CsaV3_4G009810 Cucumis sativus L. HOM05D003285 ORTHO05D003740 4.0e-06 54.7 33 63.6
TAR375G0298 Trochodendron aralioides HOM05D003285 ORTHO05D003740 4.0e-06 54.7 33 66.7
Nitab4.5_0000327g0010 Nicotiana tabacum HOM05D003285 ORTHO05D003740 5.2e-06 54.3 33 66.7
Nitab4.5_0000921g0070 Nicotiana tabacum HOM05D003285 ORTHO05D003740 5.2e-06 54.3 33 66.7
BcaB01g02133 Brassica carinata HOM05D003285 ORTHO05D003740 6.8e-06 53.9 76 43.4
Duzib068G0147 Durio zibethinus HOM05D003285 ORTHO05D003740 6.8e-06 53.9 33 66.7
Duzib205G0511 Durio zibethinus HOM05D003285 ORTHO05D003740 6.8e-06 53.9 33 66.7
Gorai.008G263600 Gossypium raimondii HOM05D003285 ORTHO05D003740 6.8e-06 53.9 78 37.2
Lalb_Chr10g0103031 Lupinus albus HOM05D003285 ORTHO05D003740 6.8e-06 53.9 68 45.6
Sopen12g015690 Solanum pennellii HOM05D003285 ORTHO05D003740 6.8e-06 53.9 33 66.7
Aqoxy5G04377 Aquilegia oxysepala HOM05D003285 ORTHO05D003740 8.8e-06 53.5 33 66.7
Carub.0006s3562 Capsella rubella HOM05D003285 ORTHO05D003740 8.8e-06 53.5 75 41.3
CAN.G303.48 Capsicum annuum HOM05D003285 ORTHO05D003740 8.8e-06 53.5 33 66.7
ECA233G5428 Erigeron canadensis HOM05D000047 ORTHO05D000044 8.8e-06 53.5 33 66.7
FvH4_7g33250 Fragaria vesca HOM05D003285 ORTHO05D003740 8.8e-06 53.5 33 66.7
FAN10G0895 Fragaria x ananassa HOM05D003285 ORTHO05D003740 8.8e-06 53.5 33 66.7
Gohir.A12G245200 Gossypium hirsutum HOM05D003285 ORTHO05D003740 8.8e-06 53.5 78 37.2
RcHm_v2.0_Chr1g0383241 Rosa chinensis HOM05D003285 ORTHO05D003740 8.8e-06 53.5 33 66.7
SalBow7G1786 Salvia bowleyana HOM05D003285 ORTHO05D003740 8.8e-06 53.5 76 40.8
Sopen03g021760 Solanum pennellii HOM05D003285 ORTHO05D003740 8.8e-06 53.5 69 42.0
PGSC0003DMG400000552 Solanum tuberosum HOM05D003285 ORTHO05D003740 8.8e-06 53.5 69 42.0
Thecc.03G211400 Theobroma cacao HOM05D003285 ORTHO05D003740 8.8e-06 53.5 33 63.6


User provided reference genes

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