Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0133100 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 3.3e-189 664.8 331 100.0
Os10g0130200 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 7.0e-38 162.2 222 46.4
Os10g0130300 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 7.8e-37 158.7 222 48.2
Os02g0272100 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 3.2e-30 136.7 216 42.6
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 3.9e-12 76.6 206 29.1
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.1e-12 76.3 198 30.3
Zm00001eb224500 Zea mays HOM05D019728 ORTHO05D023023 1.1e-11 75.1 212 32.1
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 2.5e-11 73.9 197 29.9
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 2.5e-11 73.9 229 28.4
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 5.6e-11 72.8 206 29.6
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 9.6e-11 72.0 210 27.6
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 9.6e-11 72.0 227 27.8
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 1.3e-10 71.6 214 25.7
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.6e-10 71.2 209 27.8
Zm00001eb224510 Zea mays HOM05D019728 ORTHO05D023023 1.6e-10 71.2 210 31.9
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 2.1e-10 70.9 260 26.5
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.8e-10 70.5 202 28.7
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 2.8e-10 70.5 212 28.8
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 3.6e-10 70.1 201 27.9
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 6.2e-10 69.3 246 28.5
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 6.2e-10 69.3 224 29.9
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 8.1e-10 68.9 206 27.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.1e-09 68.6 233 27.9
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.1e-09 68.6 205 27.3
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.1e-09 68.6 205 27.3
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 1.1e-09 68.6 228 26.8
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.4e-09 68.2 215 29.8
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 2.4e-09 67.4 214 32.7
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 3.1e-09 67.0 197 25.9
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.9e-09 65.9 206 27.2
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 6.9e-09 65.9 210 28.6
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 6.9e-09 65.9 207 29.0
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.2e-08 65.1 265 24.5
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.5e-08 64.7 254 24.8
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 2.6e-08 63.9 267 25.1
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 4.5e-08 63.2 216 24.5
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 5.8e-08 62.8 224 26.8
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 5.8e-08 62.8 243 27.2
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 9.9e-08 62.0 209 26.3
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 9.9e-08 62.0 207 28.5
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 9.9e-08 62.0 216 24.1
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 1.3e-07 61.6 209 27.8
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.7e-07 61.2 243 27.2
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.7e-07 61.2 223 25.6
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.7e-07 61.2 252 28.6
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 1.7e-07 61.2 214 26.6
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 2.2e-07 60.8 231 26.0
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 2.2e-07 60.8 189 26.5
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 2.9e-07 60.5 179 29.6
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.9e-07 60.5 208 27.9
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 2.9e-07 60.5 200 28.0
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 2.9e-07 60.5 300 25.3
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.9e-07 59.7 208 27.4
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 4.9e-07 59.7 208 26.9
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.4e-07 59.3 251 25.5
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.1e-06 58.5 208 26.9
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 3.2e-06 57.0 208 27.4
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 3.2e-06 57.0 213 24.4
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 9.3e-06 55.5 107 29.9
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 9.3e-06 55.5 189 27.5


User provided reference genes

Program Settings