Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0117400 Oryza sativa ssp. japonica HOM05D003057 ORTHO05D003904 6.1e-103 377.5 188 100.0
Os06g0523701 Oryza sativa ssp. japonica HOM05D003057 ORTHO05D003904 3.1e-59 232.3 144 79.9
Hma1.2p1_0622F.1_g190920 Hydrangea macrophylla HOM05D003057 ORTHO05D003904 5.2e-30 135.2 160 40.0
AL5G22340 Arabidopsis lyrata HOM05D003057 ORTHO05D003904 1.7e-25 120.2 158 37.3
AL6G26450 Arabidopsis lyrata HOM05D003057 ORTHO05D003904 8.6e-25 117.9 159 38.4
PSO339G3716 Papaver somniferum HOM05D003057 ORTHO05D003904 1.1e-24 117.5 159 36.5
PSO384G0803 Papaver somniferum HOM05D003057 ORTHO05D003904 2.5e-24 116.3 144 38.9
COL.COLO4_08929 Corchorus olitorius HOM05D003057 ORTHO05D003904 3.3e-24 115.9 162 37.0
PSO384G2563 Papaver somniferum HOM05D003057 ORTHO05D003904 4.3e-24 115.5 155 36.1
TPR.G1746 Trifolium pratense HOM05D003057 ORTHO05D003904 5.6e-24 115.2 156 38.5
COL.COLO4_20007 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.2e-23 114.0 162 36.4
PSO017G6481 Papaver somniferum HOM05D003057 ORTHO05D003904 1.2e-23 114.0 165 36.4
PSO357G0194 Papaver somniferum HOM05D003057 ORTHO05D003904 1.2e-23 114.0 167 35.9
PSO357G0652 Papaver somniferum HOM05D003057 ORTHO05D003904 1.2e-23 114.0 167 35.9
COL.COLO4_27567 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.6e-23 113.6 153 35.3
PSO724G1375 Papaver somniferum HOM05D003057 ORTHO05D003904 1.6e-23 113.6 167 35.9
PSO832G4354 Papaver somniferum HOM05D003057 ORTHO05D003904 1.6e-23 113.6 144 38.2
PSO478G2424 Papaver somniferum HOM05D003057 ORTHO05D003904 2.1e-23 113.2 156 35.9
Rhsim02G0047600 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.6e-23 112.5 159 34.0
PSO170G6610 Papaver somniferum HOM05D003057 ORTHO05D003904 4.7e-23 112.1 167 35.3
PSO832G2073 Papaver somniferum HOM05D003057 ORTHO05D003904 4.7e-23 112.1 167 35.9
SGA_v2.0_scaffold73G24256 Striga asiatica HOM05D003057 ORTHO05D003904 4.7e-23 112.1 161 39.1
Hma1.2p1_1282F.1_g272710 Hydrangea macrophylla HOM05D003057 ORTHO05D003904 1.8e-22 110.2 171 31.6
PSO339G6256 Papaver somniferum HOM05D003057 ORTHO05D003904 1.8e-22 110.2 167 34.7
PSO017G4412 Papaver somniferum HOM05D003057 ORTHO05D003904 2.4e-22 109.8 155 34.8
PSO210G2781 Papaver somniferum HOM05D003057 ORTHO05D003904 2.4e-22 109.8 165 35.8
PSO210G4431 Papaver somniferum HOM05D003057 ORTHO05D003904 9.0e-22 107.8 144 38.9
PSO675G7907 Papaver somniferum HOM05D000294 ORTHO05D000177 9.0e-22 107.8 153 35.9
Rhsim01G0115600 Rhododendron simsii HOM05D003057 ORTHO05D003904 2.0e-21 106.7 159 34.0
PSO170G1938 Papaver somniferum HOM05D003057 ORTHO05D003904 4.4e-21 105.5 155 34.8
PSO384G2001 Papaver somniferum HOM05D003057 ORTHO05D003904 4.4e-21 105.5 155 32.9
Os12g0512200 Oryza sativa ssp. japonica HOM05D033749 ORTHO05D003904 5.8e-21 105.1 69 78.3
PSO170G6344 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-20 104.0 155 34.2
PSO384G4427 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-20 104.0 155 34.2
PSO339G3646 Papaver somniferum HOM05D003057 ORTHO05D003904 3.8e-20 102.4 158 31.6
PSO339G2793 Papaver somniferum HOM05D003057 ORTHO05D003904 4.9e-20 102.1 156 34.0
Rhsim12G0027300 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.1e-19 100.9 157 31.8
PSO675G8645 Papaver somniferum HOM05D003057 ORTHO05D003904 1.4e-19 100.5 158 31.0
COL.COLO4_22596 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.9e-19 100.1 157 35.0
PSO017G2586 Papaver somniferum HOM05D003057 ORTHO05D003904 1.9e-19 100.1 158 31.0
PSO151G0074 Papaver somniferum HOM05D003057 ORTHO05D003904 2.4e-19 99.8 158 31.0
Rhsim03G0157600 Rhododendron simsii HOM05D003057 ORTHO05D003904 2.4e-19 99.8 170 28.2
ECA248G1006 Erigeron canadensis HOM05D003057 ORTHO05D003904 3.2e-19 99.4 154 32.5
Rhsim08G0118100 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.2e-19 99.4 157 33.1
RhsimUnG0099900 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.2e-19 99.4 157 33.1
Rhsim05G0119600 Rhododendron simsii HOM05D003057 ORTHO05D003904 5.4e-19 98.6 157 33.1
Psat7g220920 Pisum sativum HOM05D003057 ORTHO05D003904 7.1e-19 98.2 156 35.9
Psat6g164240 Pisum sativum HOM05D003057 ORTHO05D003904 9.3e-19 97.8 158 35.4
Psat7g039600 Pisum sativum HOM05D003057 ORTHO05D003904 9.3e-19 97.8 158 35.4
BcaC01g02975 Brassica carinata HOM05D003057 ORTHO05D003904 6.0e-18 95.1 162 32.1
COL.COLO4_35241 Corchorus olitorius HOM05D003057 ORTHO05D003904 7.8e-18 94.7 157 33.1
PSO013G0378 Papaver somniferum HOM05D003057 ORTHO05D003904 1.7e-17 93.6 158 29.7
PSO017G5295 Papaver somniferum HOM05D003057 ORTHO05D003904 1.7e-17 93.6 155 29.7
PSO170G5304 Papaver somniferum HOM05D003057 ORTHO05D003904 1.7e-17 93.6 113 39.8
COL.COLO4_10110 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.3e-17 93.2 163 33.7
Os11g0558100 Oryza sativa ssp. japonica HOM05D033749 ORTHO05D003904 3.0e-17 92.8 63 77.8
Ah.07g196960 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.9e-17 92.4 155 33.5
ECA234G4294 Erigeron canadensis HOM05D003057 ORTHO05D003904 3.9e-17 92.4 143 34.3
COL.COLO4_20032 Corchorus olitorius HOM05D003057 ORTHO05D003904 6.6e-17 91.7 160 33.1
Ah.07g202550 Amaranthus hybridus HOM05D003057 ORTHO05D003904 8.7e-17 91.3 155 32.9
Lj4g0012344 Lotus japonicus HOM05D003057 ORTHO05D003904 8.7e-17 91.3 159 32.7
RhsimUnG0227600 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.5e-16 90.5 129 34.9
PSO761G0317 Papaver somniferum HOM05D003057 ORTHO05D003904 1.9e-16 90.1 133 35.3
COL.COLO4_07828 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.5e-16 89.7 153 30.7
COL.COLO4_37623 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.5e-16 89.7 164 34.1
COL.COLO4_24961 Corchorus olitorius HOM05D003057 ORTHO05D003904 3.3e-16 89.4 163 32.5
Ah.03g142690 Amaranthus hybridus HOM05D003057 ORTHO05D003904 4.3e-16 89.0 166 31.9
Ah.04g158790 Amaranthus hybridus HOM05D003057 ORTHO05D003904 5.6e-16 88.6 155 32.3
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 5.6e-16 88.6 163 31.9
Lj2g0002985 Lotus japonicus HOM05D003057 ORTHO05D003904 9.6e-16 87.8 159 32.1
Ah.04g155590 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.3e-15 87.4 161 31.1
PSO675G6041 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-15 87.4 114 39.5
Ah.01g017940 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.6e-15 87.0 161 31.7
COL.COLO4_37543 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.8e-15 86.3 163 31.9
Ah.13g069490 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.6e-15 85.9 161 31.1
Os05g0377150 Oryza sativa ssp. japonica HOM05D033749 ORTHO05D003904 4.8e-15 85.5 58 75.9
Ah.06g184390 Amaranthus hybridus HOM05D003057 ORTHO05D003904 8.1e-15 84.7 161 31.1
Ah.01g013430 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.1e-14 84.3 161 32.9
Ah.13g068770 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.4e-14 83.2 145 34.5
PSO832G3916 Papaver somniferum HOM05D003057 ORTHO05D003904 2.4e-14 83.2 131 35.1
Ah.06g187260 Amaranthus hybridus HOM05D003057 ORTHO05D003904 5.3e-14 82.0 149 32.9
PSO357G0662 Papaver somniferum HOM05D003057 ORTHO05D003904 5.3e-14 82.0 103 37.9
Ah.03g145610 Amaranthus hybridus HOM05D003057 ORTHO05D003904 6.9e-14 81.6 145 34.5
PSO675G0308 Papaver somniferum HOM05D003057 ORTHO05D003904 9.0e-14 81.3 103 37.9
Rhsim06G0137900 Rhododendron simsii HOM05D003057 ORTHO05D003904 9.0e-14 81.3 115 32.2
Ah.10g026650 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.0e-13 80.1 145 34.5
Ah.07g201230 Amaranthus hybridus HOM05D003057 ORTHO05D003904 7.6e-13 78.2 156 30.8
Ah.07g202070 Amaranthus hybridus HOM05D003057 ORTHO05D003904 7.6e-13 78.2 113 38.9
Ah.14g084280 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.7e-12 77.0 145 31.7
Rhsim09G0063100 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.7e-12 77.0 123 27.6
Duzib205G1595 Durio zibethinus HOM05D003057 ORTHO05D003904 4.9e-12 75.5 170 27.1
SGA_v2.0_scaffold16G07775 Striga asiatica HOM05D003057 ORTHO05D003904 4.9e-12 75.5 160 31.9
Rhsim11G0159700 Rhododendron simsii HOM05D003057 ORTHO05D003904 8.4e-12 74.7 123 30.1
TPR.G34813 Trifolium pratense HOM05D003057 ORTHO05D003904 1.1e-11 74.3 157 28.7
Rhsim02G0188200 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.4e-11 73.9 160 25.6
Ah.15g097480 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.2e-11 72.8 101 37.6
BcaC04g21929 Brassica carinata HOM05D003057 ORTHO05D003904 3.2e-11 72.8 150 28.0
Rhsim01G0125100 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.2e-11 72.8 123 29.3
Ah.06g182610 Amaranthus hybridus HOM05D003057 ORTHO05D003904 5.4e-11 72.0 136 30.1
SGA_v2.0_scaffold17G08157 Striga asiatica HOM05D003057 ORTHO05D003904 9.3e-11 71.2 99 36.4
Ah.03g140530 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.2e-10 70.9 101 36.6
COL.COLO4_37503 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.2e-10 70.9 158 28.5
Hma1.2p1_2610F.1_g325360 Hydrangea macrophylla HOM05D003057 ORTHO05D003904 2.1e-10 70.1 136 28.7
COL.COLO4_33793 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.7e-10 69.7 94 38.3
CAN.G523.32 Capsicum annuum HOM05D002887 ORTHO05D003159 3.5e-10 69.3 78 43.6
Rhsim11G0002500 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.5e-10 69.3 105 32.4
Ah.04g164590 Amaranthus hybridus HOM05D003057 ORTHO05D003904 4.6e-10 68.9 155 27.7
Rhsim02G0188400 Rhododendron simsii HOM05D003057 ORTHO05D003904 6.0e-10 68.6 160 24.4
Ah.11g041830 Amaranthus hybridus HOM05D003057 ORTHO05D003904 7.9e-10 68.2 124 32.3
TPR.G14797 Trifolium pratense HOM05D003057 ORTHO05D003904 7.9e-10 68.2 80 38.8
Ah.11g046560 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.3e-09 67.4 136 28.7
RhsimUnG0134200 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.8e-09 67.0 90 35.6
PSO675G7321 Papaver somniferum HOM05D003057 ORTHO05D003904 2.3e-09 66.6 99 36.4
Ah.11g045640 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.0e-09 66.2 155 27.1
Rhsim01G0178000 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.9e-09 65.9 90 34.4
Rhsim11G0020100 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.9e-09 65.9 99 31.3
Rhsim10G0170800 Rhododendron simsii HOM05D003057 ORTHO05D003904 8.7e-09 64.7 90 34.4
TPR.G5033 Trifolium pratense HOM05D003057 ORTHO05D003904 1.9e-08 63.5 117 30.8
EL10Ac3g06227 Beta vulgaris HOM05D002797 ORTHO05D021453 3.3e-08 62.8 109 30.3
PSO170G6652 Papaver somniferum HOM05D003057 ORTHO05D003904 4.3e-08 62.4 99 34.3
PSO210G2682 Papaver somniferum HOM05D003057 ORTHO05D003904 4.3e-08 62.4 75 38.7
PSO761G0015 Papaver somniferum HOM05D003057 ORTHO05D003904 4.3e-08 62.4 75 38.7
PSO170G6744 Papaver somniferum HOM05D003057 ORTHO05D003904 9.6e-08 61.2 91 36.3
PSO339G0160 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-07 60.8 80 37.5
RhsimUnG0046200 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.6e-07 60.5 90 32.2
Ah.16g106200 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.8e-07 59.7 147 26.5
SGA_v2.0_scaffold116G32300 Striga asiatica HOM05D003057 ORTHO05D012636 4.8e-07 58.9 83 44.6
Os12g0231600 Oryza sativa ssp. japonica HOM05D003057 ORTHO05D012636 3.1e-06 56.2 61 49.2
Os01g0350500 Oryza sativa ssp. japonica HOM05D003057 ORTHO05D003904 4.0e-06 55.8 115 28.7
COL.COLO4_04362 Corchorus olitorius HOM05D003057 ORTHO05D003904 5.3e-06 55.5 153 24.8
Sp3g10110 Schrenkiella parvula HOM05D036201 ORTHO05D012636 5.3e-06 55.5 53 50.9


User provided reference genes

Program Settings