Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 8.3e-238 826.6 414 100.0
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.8e-232 807.0 414 98.8
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.4e-192 676.4 419 82.3
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 2.1e-180 636.0 416 77.9
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 1.5e-133 480.3 390 63.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 4.3e-133 478.8 390 63.1
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 5.2e-131 471.9 390 60.8
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.3e-129 467.2 391 61.9
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.7e-129 466.8 388 60.8
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 1.8e-128 463.4 390 62.1
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.3e-126 457.2 387 60.7
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 1.3e-126 457.2 389 60.7
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.7e-126 456.8 387 59.7
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.7e-126 456.8 383 61.4
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.7e-126 456.8 394 61.2
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.7e-126 456.8 389 60.7
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 1.7e-126 456.8 390 60.8
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 3.9e-126 455.7 389 62.5
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 6.6e-126 454.9 387 61.0
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.9e-125 453.4 395 60.8
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 2.5e-125 453.0 440 55.7
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 5.6e-125 451.8 389 60.2
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 9.5e-125 451.1 389 60.2
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 1.6e-124 450.3 392 60.2
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.1e-124 449.9 392 59.4
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 6.2e-124 448.4 404 59.9
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.2e-124 448.4 408 59.1
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.0e-123 447.6 389 60.2
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 2.3e-123 446.4 386 60.1
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 8.9e-123 444.5 405 57.0
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-122 444.1 389 58.1
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.2e-122 444.1 389 58.1
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 1.2e-122 444.1 383 60.6
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.6e-122 443.0 384 60.2
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 3.4e-122 442.6 390 58.2
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 7.5e-122 441.4 389 59.4
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.7e-121 439.1 389 57.6
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.7e-121 439.1 389 58.6
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 4.9e-121 438.7 386 57.3
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 4.9e-121 438.7 392 57.9
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 4.9e-121 438.7 388 58.5
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 4.9e-121 438.7 391 59.1
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.4e-121 438.3 389 58.6
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 8.3e-121 438.0 388 58.2
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.4e-120 437.2 394 58.9
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 1.9e-120 436.8 391 59.3
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 3.2e-120 436.0 383 59.3
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.2e-120 436.0 389 58.4
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 3.2e-120 436.0 387 57.6
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 4.1e-120 435.6 388 57.7
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 4.1e-120 435.6 389 58.6
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 4.1e-120 435.6 386 58.8
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 7.0e-120 434.9 387 59.4
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 7.0e-120 434.9 389 58.9
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 9.2e-120 434.5 385 58.4
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.2e-119 434.1 388 58.0
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.6e-119 433.7 389 57.8
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.0e-118 431.0 390 58.2
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.7e-118 430.3 389 57.8
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.0e-118 429.5 415 55.9
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 3.9e-118 429.1 392 58.2
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 5.0e-118 428.7 387 57.9
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 5.0e-118 428.7 388 58.5
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 6.6e-118 428.3 387 58.4
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 4.3e-117 425.6 387 56.6
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 5.6e-117 425.2 389 57.3
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 5.6e-117 425.2 383 58.5
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 9.5e-117 424.5 385 58.2
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.2e-116 424.1 385 58.2
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 1.6e-116 423.7 388 57.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 1.6e-116 423.7 395 56.7
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 4.7e-116 422.2 383 58.5
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 8.1e-116 421.4 385 57.9
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 1.1e-115 421.0 389 56.6
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.4e-115 420.6 418 55.7
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 5.2e-115 418.7 390 57.2
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 8.9e-115 417.9 381 58.0
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 2.6e-114 416.4 381 57.7
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.4e-114 416.0 383 56.4
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 4.4e-114 415.6 379 55.9
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 4.4e-114 415.6 391 57.5
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 9.8e-114 414.5 392 56.9
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 2.2e-113 413.3 388 56.7
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 2.9e-113 412.9 392 56.6
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 6.4e-113 411.8 386 56.5
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 2.1e-111 406.8 398 56.3
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.7e-111 406.4 402 55.5
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 3.5e-111 406.0 416 52.9
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 6.0e-111 405.2 388 55.7
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.3e-110 403.3 389 56.6
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 3.3e-109 399.4 385 55.3
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.6e-106 388.3 357 56.0
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 8.4e-105 384.8 392 52.8
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 1.6e-103 380.6 403 51.4
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 3.9e-102 375.9 388 52.6
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 9.6e-101 371.3 423 48.7
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 2.6e-98 363.2 310 60.3
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.9e-97 359.8 412 49.8
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 6.4e-97 358.6 390 51.3
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.3e-94 350.9 388 50.3
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.7e-94 350.5 391 50.1
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.1e-93 347.8 376 50.3
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.9e-93 347.1 375 49.9
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.1e-88 331.3 385 49.4
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.2e-87 327.8 263 62.4
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 2.7e-87 326.6 435 45.5
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 6.0e-87 325.5 389 48.3
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 7.9e-87 325.1 388 47.9
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 8.7e-86 321.6 402 46.8
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.3e-77 293.1 423 42.6
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 2.1e-76 290.4 371 44.2
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 7.6e-74 282.0 389 42.9
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.2e-72 276.2 415 40.0
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.3e-70 271.2 298 50.0
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.8e-70 270.8 300 49.0
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.6e-63 246.5 267 51.3
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.9e-56 224.2 220 51.4
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 7.7e-50 202.2 238 45.4
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.4e-46 191.4 330 39.4
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 1.3e-44 184.9 344 38.7
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 5.0e-41 172.9 142 64.1
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 5.2e-38 162.9 149 56.4
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.0e-27 125.9 109 56.9
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.0e-26 124.4 109 56.0
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.5e-26 123.6 109 56.9
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.5e-24 117.5 109 54.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 2.8e-23 114.0 128 49.2
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.3e-20 105.1 96 58.3
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 5.4e-19 99.8 93 49.5
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.1e-16 92.0 100 44.0
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 1.5e-16 91.7 122 45.1
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 5.6e-16 89.7 116 49.1
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 9.5e-16 89.0 153 38.6
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.7e-12 78.2 61 59.0
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 1.8e-11 74.7 59 59.3
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 5.9e-10 69.7 49 67.3
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 6.6e-09 66.2 304 23.4
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.6e-08 63.2 50 54.0
PRCOL_00001539 Prasinoderma coloniale HOM05D000059 ORTHO05D333127 1.2e-07 62.0 182 30.2
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 4.7e-07 60.1 52 51.9
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 3.1e-06 57.4 72 40.3


User provided reference genes

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