Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 1.8e-117 426.0 223 100.0
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 2.7e-86 322.4 223 74.0
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 2.6e-68 262.7 221 60.2
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 5.7e-68 261.5 217 58.5
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 1.6e-65 253.4 217 57.1
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 4.6e-65 251.9 218 57.8
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 7.8e-65 251.1 220 58.2
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 7.8e-65 251.1 227 57.3
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 1.0e-64 250.8 215 58.1
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 3.0e-64 249.2 220 56.4
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 3.0e-64 249.2 218 57.3
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 5.0e-64 248.4 220 56.4
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 5.0e-64 248.4 220 56.8
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 6.6e-64 248.1 217 61.3
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 1.5e-63 246.9 227 55.1
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 2.5e-63 246.1 220 54.5
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 4.3e-63 245.4 214 58.9
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 4.3e-63 245.4 222 58.1
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 5.6e-63 245.0 220 54.1
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 5.6e-63 245.0 222 56.3
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 5.6e-63 245.0 219 56.6
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 7.3e-63 244.6 221 55.7
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 7.3e-63 244.6 223 55.6
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 9.5e-63 244.2 214 58.4
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 9.5e-63 244.2 216 57.9
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.2e-62 243.8 221 55.7
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 1.6e-62 243.4 214 57.0
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 2.1e-62 243.0 214 56.5
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 3.6e-62 242.3 216 57.4
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 4.7e-62 241.9 218 54.6
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 6.2e-62 241.5 214 57.9
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 1.0e-61 240.7 217 56.2
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 1.4e-61 240.4 220 54.5
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 1.4e-61 240.4 214 57.9
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 1.8e-61 240.0 216 55.6
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 1.8e-61 240.0 219 55.3
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 2.3e-61 239.6 225 54.7
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 2.3e-61 239.6 216 55.1
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 2.3e-61 239.6 218 54.6
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 3.1e-61 239.2 219 56.2
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 4.0e-61 238.8 220 54.1
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 4.0e-61 238.8 211 55.9
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 4.0e-61 238.8 215 56.3
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 4.0e-61 238.8 232 52.6
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 5.2e-61 238.4 214 59.8
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 5.2e-61 238.4 219 54.3
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 5.2e-61 238.4 216 55.1
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 6.8e-61 238.0 214 55.6
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 8.9e-61 237.7 214 55.6
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 1.5e-60 236.9 214 57.0
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 1.5e-60 236.9 226 54.9
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.5e-60 236.9 221 54.8
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 2.0e-60 236.5 213 55.9
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 2.6e-60 236.1 214 55.1
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 2.6e-60 236.1 214 54.7
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 2.6e-60 236.1 224 52.2
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 2.6e-60 236.1 220 54.5
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 3.4e-60 235.7 224 52.2
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 4.4e-60 235.3 220 54.1
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 5.8e-60 235.0 216 55.1
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 5.8e-60 235.0 219 58.0
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 7.5e-60 234.6 219 56.6
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 9.8e-60 234.2 220 53.6
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 1.3e-59 233.8 214 59.3
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 1.3e-59 233.8 219 52.1
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 1.3e-59 233.8 219 57.1
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 1.7e-59 233.4 214 57.5
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 1.7e-59 233.4 220 58.2
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 1.7e-59 233.4 215 54.9
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 1.7e-59 233.4 224 51.8
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 2.2e-59 233.0 214 58.4
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 2.9e-59 232.6 214 55.6
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 4.9e-59 231.9 219 56.2
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 4.9e-59 231.9 219 55.7
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 6.4e-59 231.5 223 51.6
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 8.3e-59 231.1 213 54.5
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 8.3e-59 231.1 219 53.9
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 1.1e-58 230.7 214 58.4
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.4e-58 230.3 211 55.5
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 1.4e-58 230.3 231 51.5
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 1.9e-58 229.9 214 56.1
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 1.9e-58 229.9 225 52.0
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 5.4e-58 228.4 216 54.6
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 5.4e-58 228.4 224 53.6
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 2.0e-57 226.5 219 53.0
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 3.5e-57 225.7 221 54.8
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 3.5e-57 225.7 221 54.8
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 4.6e-57 225.3 221 54.8
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 4.6e-57 225.3 222 54.5
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 7.8e-57 224.6 190 57.9
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 1.3e-56 223.8 223 52.5
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 1.7e-56 223.4 219 51.1
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 5.0e-56 221.9 214 55.6
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 8.6e-56 221.1 220 52.7
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 2.5e-55 219.5 225 52.4
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 5.6e-55 218.4 275 46.2
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 4.7e-54 215.3 193 56.0
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 1.2e-52 210.7 228 46.9
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 7.5e-52 208.0 209 51.7
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 4.9e-51 205.3 216 48.6
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 3.9e-48 195.7 143 68.5
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 8.6e-48 194.5 147 61.9
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 2.5e-47 193.0 157 59.2
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 1.6e-46 190.3 217 47.9
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 3.1e-45 186.0 141 62.4
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 3.4e-44 182.6 148 58.1
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 5.8e-44 181.8 213 46.9
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.9e-43 179.5 147 59.9
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 1.3e-35 154.1 213 40.4
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 4.9e-35 152.1 113 62.8
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 2.1e-30 136.7 115 53.0
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 8.1e-30 134.8 192 42.7
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 3.1e-13 79.7 96 44.8
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 2.6e-12 76.6 178 36.5
MCO13G047 Micromonas commoda HOM05D006861 ORTHO05D008620 3.9e-08 62.8 209 26.8


User provided reference genes

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