Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 3.3e-37 157.9 83 100.0
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 5.9e-26 120.6 84 78.6
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 3.6e-23 111.3 84 73.8
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 3.6e-23 111.3 84 72.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.4e-22 109.4 84 73.8
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.6e-15 85.9 83 54.2
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 8.0e-15 83.6 84 54.8
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.0e-14 83.2 83 59.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.4e-14 82.8 83 56.6
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.4e-14 82.8 80 58.8
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.3e-14 82.0 85 55.3
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.0e-14 81.6 85 56.5
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.0e-14 81.3 84 53.6
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 5.2e-14 80.9 83 56.6
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 6.8e-14 80.5 83 55.4
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.8e-14 80.5 83 50.6
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 6.8e-14 80.5 85 56.5
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 8.8e-14 80.1 83 57.8
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 8.8e-14 80.1 83 53.0
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 8.8e-14 80.1 83 53.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 1.5e-13 79.3 84 57.1
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.6e-13 78.6 84 52.4
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 2.6e-13 78.6 83 53.0
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 5.7e-13 77.4 83 51.8
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 5.7e-13 77.4 83 53.0
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 9.8e-13 76.6 85 51.8
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.3e-12 76.3 79 53.2
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 1.3e-12 76.3 78 59.0
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.7e-12 75.9 78 53.8
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.2e-12 75.5 79 57.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 2.2e-12 75.5 83 54.2
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.2e-12 75.5 88 58.0
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 2.8e-12 75.1 80 58.8
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.8e-12 75.1 85 54.1
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 3.7e-12 74.7 88 52.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 3.7e-12 74.7 85 55.3
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 3.7e-12 74.7 86 48.8
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 4.8e-12 74.3 84 52.4
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 6.3e-12 73.9 84 51.2
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 6.3e-12 73.9 83 49.4
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.8e-11 72.4 88 52.3
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.8e-11 72.4 78 50.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.4e-11 72.0 84 53.6
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 2.4e-11 72.0 87 50.6
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 4.1e-11 71.2 84 53.6
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 4.1e-11 71.2 80 52.5
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 4.1e-11 71.2 80 52.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 4.1e-11 71.2 84 48.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 4.1e-11 71.2 78 50.0
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 4.1e-11 71.2 79 53.2
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 4.1e-11 71.2 85 56.5
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 5.4e-11 70.9 78 51.3
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 7.0e-11 70.5 81 53.1
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 7.0e-11 70.5 85 56.5
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 7.0e-11 70.5 86 48.8
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 9.1e-11 70.1 78 52.6
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 9.1e-11 70.1 82 53.7
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.2e-10 69.7 79 49.4
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.6e-10 69.3 84 50.0
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-10 69.3 82 52.4
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.6e-10 69.3 82 52.4
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.6e-10 69.3 78 52.6
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 2.0e-10 68.9 78 50.0
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.0e-10 68.9 83 48.2
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 2.7e-10 68.6 84 46.4
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 2.7e-10 68.6 81 51.9
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 3.5e-10 68.2 83 49.4
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.5e-10 68.2 85 48.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 4.5e-10 67.8 85 50.6
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 4.5e-10 67.8 80 55.0
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 5.9e-10 67.4 85 50.6
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 5.9e-10 67.4 87 50.6
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.9e-10 67.4 82 53.7
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 7.7e-10 67.0 78 52.6
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.0e-09 66.6 69 59.4
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.0e-09 66.6 78 47.4
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.0e-09 66.6 82 53.7
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.0e-09 66.6 82 53.7
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.3e-09 66.2 78 52.6
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.3e-09 66.2 78 52.6
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.3e-09 66.2 78 52.6
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.3e-09 66.2 78 51.3
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.3e-09 66.2 78 51.3
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.7e-09 65.9 78 51.3
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.7e-09 65.9 85 50.6
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.7e-09 65.9 80 51.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.7e-09 65.9 80 51.2
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.2e-09 65.5 78 51.3
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.2e-09 65.5 78 51.3
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.2e-09 65.5 78 48.7
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.2e-09 65.5 82 50.0
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 3.8e-09 64.7 84 46.4
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 5.0e-09 64.3 79 48.1
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 5.0e-09 64.3 80 46.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 6.5e-09 63.9 82 48.8
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 8.5e-09 63.5 81 51.9
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 8.5e-09 63.5 85 50.6
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.1e-08 63.2 83 47.0
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.5e-08 62.8 78 50.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.9e-08 62.4 83 47.0
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.9e-08 62.4 81 49.4
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 2.5e-08 62.0 84 41.7
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 5.5e-08 60.8 78 44.9
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 5.5e-08 60.8 87 46.0
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 7.2e-08 60.5 78 48.7
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 7.2e-08 60.5 78 48.7
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 7.2e-08 60.5 79 49.4
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 7.2e-08 60.5 80 46.2
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.2e-07 59.7 79 49.4
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-07 59.3 80 48.8
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.6e-07 59.3 80 48.8
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.6e-07 59.3 80 48.8
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 2.7e-07 58.5 70 51.4
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 3.6e-07 58.2 70 51.4
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 4.7e-07 57.8 80 45.0
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.7e-07 57.8 79 48.1
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 6.1e-07 57.4 89 39.3
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.0e-06 56.6 81 46.9
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.0e-06 56.6 92 44.6
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.8e-06 55.8 79 48.1
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.8e-06 55.8 71 49.3
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.8e-06 55.8 71 49.3
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.0e-06 55.1 70 45.7
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 3.0e-06 55.1 83 42.2
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 6.8e-06 53.9 81 44.4
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 8.8e-06 53.5 72 45.8


User provided reference genes

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