Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 0.0e+00 1266.1 644 100.0
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 4.0e-271 937.9 655 73.9
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 5.0e-149 532.3 652 47.2
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 5.2e-146 522.3 650 47.4
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 1.3e-144 517.7 654 45.9
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 6.4e-144 515.4 662 46.7
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.1e-141 505.8 653 44.3
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 3.3e-140 503.1 651 43.2
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 5.6e-140 502.3 658 45.1
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 7.3e-140 501.9 658 45.1
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 4.7e-139 499.2 658 43.9
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 1.7e-136 490.7 649 43.6
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 1.7e-136 490.7 660 45.9
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 4.9e-136 489.2 650 44.9
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 1.9e-135 487.3 650 43.7
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 9.2e-135 485.0 655 44.3
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 2.1e-134 483.8 656 44.1
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 2.1e-134 483.8 653 43.5
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 2.1e-134 483.8 652 43.4
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 7.8e-134 481.9 654 44.3
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 5.1e-133 479.2 685 41.8
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 8.6e-133 478.4 659 42.8
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 9.5e-132 474.9 657 43.7
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 2.1e-131 473.8 660 42.4
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 2.1e-131 473.8 656 43.4
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 3.6e-131 473.0 653 42.9
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 6.2e-131 472.2 654 42.8
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 4.0e-130 469.5 650 42.3
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 1.2e-129 468.0 653 44.0
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 2.0e-129 467.2 671 41.6
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 2.6e-129 466.8 658 42.7
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 4.4e-129 466.1 662 42.7
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 2.2e-128 463.8 651 42.1
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 2.2e-128 463.8 659 43.4
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 2.9e-128 463.4 645 42.5
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 4.9e-128 462.6 659 41.6
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 4.9e-128 462.6 653 42.7
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 4.9e-128 462.6 655 43.8
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.4e-127 461.1 648 41.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 1.4e-127 461.1 654 43.0
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 1.9e-127 460.7 654 42.4
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 2.4e-127 460.3 658 42.4
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 2.4e-127 460.3 655 42.4
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 5.4e-127 459.1 662 40.5
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 5.4e-127 459.1 648 41.0
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 5.4e-127 459.1 654 41.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 2.1e-126 457.2 662 42.1
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 6.0e-126 455.7 655 40.9
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 6.0e-126 455.7 646 41.0
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 7.8e-126 455.3 654 40.8
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 3.0e-125 453.4 666 40.5
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 3.9e-125 453.0 646 42.4
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 1.5e-124 451.1 655 42.0
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 1.9e-124 450.7 647 42.3
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 5.6e-124 449.1 653 42.3
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 1.3e-123 448.0 679 39.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 1.6e-123 447.6 654 41.4
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 3.6e-123 446.4 679 39.5
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 2.4e-122 443.7 652 41.9
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 3.1e-122 443.4 661 42.7
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 4.0e-122 443.0 654 41.4
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 4.0e-122 443.0 657 42.0
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 6.9e-122 442.2 657 40.3
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 1.5e-121 441.0 653 40.9
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.8e-120 436.4 644 42.1
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 6.4e-120 435.6 544 46.3
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 1.9e-119 434.1 686 40.1
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 5.4e-119 432.6 651 40.7
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.2e-118 431.4 657 41.7
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 2.1e-118 430.6 654 39.9
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 1.1e-116 424.9 657 40.3
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 2.8e-115 420.2 656 40.5
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 4.8e-115 419.5 658 41.2
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 6.2e-115 419.1 653 42.7
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 1.8e-114 417.5 671 41.3
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 1.8e-114 417.5 657 40.5
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 2.4e-114 417.2 533 44.5
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 1.3e-109 401.4 664 40.7
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 8.7e-109 398.7 536 43.5
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 3.3e-108 396.7 863 32.9
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 5.6e-108 396.0 648 40.6
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 1.2e-102 378.3 655 36.9
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 8.7e-93 345.5 462 42.0
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 7.4e-92 342.4 654 37.0
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.0e-88 332.0 431 42.2
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 1.1e-87 328.6 685 33.4
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 2.3e-85 320.9 684 35.8
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 2.8e-75 287.3 651 31.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 3.1e-74 283.9 697 30.6
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.3e-72 278.5 360 45.6
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 4.2e-71 273.5 701 32.0
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 2.7e-62 244.2 337 43.3
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 1.3e-56 225.3 296 44.9
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.2e-45 186.8 317 36.3
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 2.0e-44 184.9 519 30.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 7.5e-44 183.0 235 46.4
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 2.9e-43 181.0 292 36.0
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.0e-40 172.6 296 35.5
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.8e-37 159.8 231 39.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.5e-36 156.4 228 43.4
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 1.6e-33 148.7 148 53.4
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 2.0e-33 148.3 192 41.7
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.5e-33 147.5 192 40.6
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.8e-28 130.2 147 48.3
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 9.8e-28 129.4 139 52.5
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.9e-27 127.9 163 41.1
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 4.6e-25 120.6 256 34.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-16 92.4 162 38.3
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.9e-16 90.9 142 42.3
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 3.1e-13 81.3 102 44.1
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 6.4e-11 73.6 141 31.9
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.9e-10 72.0 92 42.4


User provided reference genes

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