Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0553800 Oryza sativa ssp. japonica HOM05D007302 ORTHO05D009191 1.6e-30 135.6 74 100.0
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 6.2e-19 97.1 69 69.6
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 6.2e-19 97.1 67 76.1
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 1.1e-18 96.3 69 69.6
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 1.1e-18 96.3 67 74.6
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 1.4e-18 95.9 62 80.6
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 1.8e-18 95.5 74 66.2
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 1.8e-18 95.5 66 72.7
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 3.1e-18 94.7 68 72.1
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 4.0e-18 94.4 68 70.6
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 4.0e-18 94.4 69 69.6
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 5.3e-18 94.0 66 69.7
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 6.9e-18 93.6 68 70.6
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 6.9e-18 93.6 73 68.5
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 6.9e-18 93.6 66 71.2
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 9.0e-18 93.2 71 70.4
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 9.0e-18 93.2 71 70.4
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 9.0e-18 93.2 68 70.6
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 1.2e-17 92.8 72 65.3
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 1.2e-17 92.8 74 67.6
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 1.2e-17 92.8 68 69.1
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 1.2e-17 92.8 63 76.2
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 1.5e-17 92.4 71 69.0
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 1.5e-17 92.4 66 71.2
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 1.5e-17 92.4 66 71.2
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 2.0e-17 92.0 71 67.6
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 2.0e-17 92.0 59 76.3
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 2.0e-17 92.0 61 75.4
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 3.4e-17 91.3 72 65.3
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 4.5e-17 90.9 71 69.0
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 5.8e-17 90.5 72 65.3
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 5.8e-17 90.5 66 69.7
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 5.8e-17 90.5 73 64.4
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 7.6e-17 90.1 71 64.8
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 9.9e-17 89.7 72 62.5
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 9.9e-17 89.7 72 62.5
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 9.9e-17 89.7 64 71.9
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 9.9e-17 89.7 64 71.9
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 9.9e-17 89.7 73 64.4
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 9.9e-17 89.7 64 70.3
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 1.3e-16 89.4 68 61.8
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 1.3e-16 89.4 74 63.5
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 1.7e-16 89.0 74 62.2
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 1.7e-16 89.0 59 76.3
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 2.2e-16 88.6 73 63.0
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 2.9e-16 88.2 72 66.7
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 3.8e-16 87.8 69 65.2
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 3.8e-16 87.8 73 64.4
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 3.8e-16 87.8 73 64.4
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 3.8e-16 87.8 64 65.6
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 4.9e-16 87.4 59 74.6
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 4.9e-16 87.4 64 70.3
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 6.4e-16 87.0 74 59.5
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 8.4e-16 86.7 73 61.6
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 1.1e-15 86.3 73 58.9
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 1.1e-15 86.3 73 58.9
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 1.4e-15 85.9 62 69.4
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 1.4e-15 85.9 52 84.6
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 1.9e-15 85.5 68 64.7
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 2.4e-15 85.1 59 71.2
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 2.4e-15 85.1 66 65.2
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 2.4e-15 85.1 66 65.2
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 3.2e-15 84.7 64 60.9
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 3.2e-15 84.7 64 60.9
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 3.2e-15 84.7 62 67.7
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 4.2e-15 84.3 69 63.8
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 4.2e-15 84.3 66 63.6
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 4.2e-15 84.3 56 75.0
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 5.4e-15 84.0 73 61.6
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 7.1e-15 83.6 66 65.2
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 7.1e-15 83.6 68 64.7
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 9.3e-15 83.2 68 63.2
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 1.2e-14 82.8 68 61.8
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 1.6e-14 82.4 62 66.1
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 1.6e-14 82.4 64 64.1
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 3.5e-14 81.3 65 61.5
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 3.5e-14 81.3 59 66.1
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 3.5e-14 81.3 59 66.1
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 4.6e-14 80.9 71 59.2
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 1.0e-13 79.7 67 67.2
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 1.0e-13 79.7 73 58.9
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 1.8e-13 79.0 73 63.0
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 1.8e-13 79.0 76 55.3
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 1.8e-13 79.0 76 55.3
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 1.8e-13 79.0 76 55.3
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 2.3e-13 78.6 57 68.4
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 3.9e-13 77.8 54 72.2
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 6.7e-13 77.0 71 54.9
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 6.7e-13 77.0 56 64.3
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 1.1e-12 76.3 73 57.5
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.9e-12 75.5 61 62.3
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 1.9e-12 75.5 74 55.4
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 1.9e-12 75.5 74 56.8
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 4.3e-12 74.3 68 52.9
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 9.6e-12 73.2 56 69.6
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 9.6e-12 73.2 73 56.2
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 1.3e-11 72.8 74 54.1
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 2.1e-11 72.0 73 56.2
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 3.7e-11 71.2 72 51.4
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 2.4e-10 68.6 71 46.5
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 2.5e-07 58.5 66 50.0
MD15G1336100 Malus domestica HOM05D007302 ORTHO05D009191 9.3e-07 56.6 55 54.5
Pp3c17_19080 Physcomitrium patens HOM05D007302 ORTHO05D009191 2.1e-06 55.5 70 44.3
CBR_g22319 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-06 54.3 71 45.1


User provided reference genes

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