Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 1.6e-203 712.6 372 100.0
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.2e-164 581.6 378 83.1
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 5.0e-141 505.0 350 72.9
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.9e-140 503.1 356 71.3
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.2e-140 501.9 313 78.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 9.4e-140 500.7 315 78.1
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.1e-139 499.6 332 76.5
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.6e-139 498.8 313 79.2
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 7.9e-139 497.7 363 69.7
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.3e-138 496.1 341 73.0
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 6.7e-138 494.6 313 79.2
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 8.8e-138 494.2 313 77.0
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.5e-137 493.4 315 77.5
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.5e-137 493.4 344 74.4
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 1.5e-137 493.4 335 75.8
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 2.6e-137 492.7 313 78.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 2.6e-137 492.7 352 70.5
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.3e-137 492.3 324 75.9
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 4.4e-137 491.9 313 78.3
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 5.7e-137 491.5 342 74.0
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.3e-136 490.3 344 72.1
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.3e-136 490.3 366 68.3
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.7e-136 490.0 358 70.7
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 2.2e-136 489.6 313 77.6
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 2.2e-136 489.6 335 75.2
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 2.2e-136 489.6 323 75.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.8e-136 489.2 320 75.6
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 2.8e-136 489.2 342 73.7
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.8e-136 489.2 346 72.3
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 3.7e-136 488.8 324 75.6
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 8.2e-136 487.6 357 69.7
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 8.2e-136 487.6 313 76.7
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.1e-135 487.3 313 77.3
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.1e-135 487.3 342 72.8
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.4e-135 486.9 324 75.9
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.4e-135 486.9 313 78.3
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.4e-135 486.9 357 69.2
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.8e-135 486.5 323 76.5
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.4e-135 486.1 357 68.9
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 4.1e-135 485.3 313 78.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 4.1e-135 485.3 319 75.9
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 5.3e-135 485.0 348 71.3
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 5.3e-135 485.0 343 72.9
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 7.0e-135 484.6 353 69.7
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 7.0e-135 484.6 345 71.3
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 9.1e-135 484.2 312 75.6
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 9.1e-135 484.2 355 69.6
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 9.1e-135 484.2 313 76.0
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.2e-134 483.8 314 76.4
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.2e-134 483.8 313 77.3
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.2e-134 483.8 313 77.3
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 1.2e-134 483.8 347 71.2
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.6e-134 483.4 357 69.7
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.6e-134 483.4 315 75.2
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.0e-134 483.0 339 71.7
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.0e-134 483.0 355 69.6
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 2.6e-134 482.6 324 73.1
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 3.5e-134 482.3 313 77.3
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 7.7e-134 481.1 369 67.2
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 7.7e-134 481.1 339 70.8
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 7.7e-134 481.1 353 69.7
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 7.7e-134 481.1 332 73.2
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 7.7e-134 481.1 321 73.2
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.0e-133 480.7 352 70.5
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.0e-133 480.7 317 75.1
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.7e-133 479.9 313 77.0
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.7e-133 479.9 329 73.3
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.9e-133 479.2 353 70.8
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 5.0e-133 478.4 313 76.7
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 5.0e-133 478.4 345 71.0
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 5.0e-133 478.4 355 69.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 6.5e-133 478.0 346 70.2
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.1e-132 477.2 390 65.4
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.9e-132 476.5 357 68.9
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 9.4e-132 474.2 312 75.0
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.0e-130 470.7 360 67.5
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.2e-129 467.2 374 66.0
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.4e-129 465.3 375 65.1
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.1e-127 460.7 384 64.3
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.7e-123 446.0 309 71.8
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 8.0e-123 444.5 322 69.3
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.4e-122 443.7 287 77.0
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 7.5e-121 438.0 280 75.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.7e-120 435.6 282 73.8
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 4.8e-120 435.3 354 65.8
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.3e-120 434.5 313 70.3
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 5.4e-119 431.8 318 71.7
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.7e-117 426.8 323 67.2
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 2.5e-116 422.9 325 68.6
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 3.2e-116 422.5 322 68.0
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.0e-113 413.3 304 69.4
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.7e-112 410.2 321 66.7
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 3.7e-112 409.1 264 75.4
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.9e-110 401.7 407 55.3
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 5.0e-109 398.7 345 60.3
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 6.6e-109 398.3 270 71.9
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 8.6e-109 397.9 278 69.8
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 1.2e-107 394.0 348 62.9
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 5.7e-105 385.2 255 75.3
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 9.2e-103 377.9 242 78.5
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.2e-102 377.5 314 62.1
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 3.6e-99 365.9 313 60.7
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.3e-96 357.5 356 54.8
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 4.9e-88 328.9 221 73.3
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.3e-85 320.9 316 55.7
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 3.3e-84 316.2 220 75.0
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.6e-83 312.8 215 71.2
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.8e-82 310.5 319 53.9
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 5.8e-81 305.4 313 53.4
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 6.4e-80 302.0 230 65.7
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.1e-79 301.2 192 79.2
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 3.3e-76 289.7 185 78.4
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 3.2e-63 246.5 167 74.3
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.4e-60 235.3 189 61.9
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 4.0e-58 229.6 349 42.4
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 9.6e-52 208.4 151 67.5
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.7e-51 206.5 285 45.6
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.0e-48 198.4 160 63.1
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 2.4e-42 177.2 240 49.2
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 3.4e-41 173.3 154 59.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 4.5e-41 172.9 280 37.9
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.2e-40 170.6 129 62.8
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 5.0e-32 142.9 259 37.8
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 2.5e-31 140.6 140 57.1
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 7.2e-31 139.0 97 62.9
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.7e-30 137.1 95 64.2
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.3e-29 134.0 260 35.4
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 2.6e-28 130.6 101 70.3
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.8e-27 126.3 85 67.1
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.9e-23 114.4 81 69.1
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-19 101.7 89 67.4
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 8.2e-19 99.0 88 64.8
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.4e-18 98.2 109 52.3
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.4e-18 98.2 113 48.7
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.0e-16 92.0 60 75.0
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 9.4e-15 85.5 52 71.2
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.6e-14 83.6 54 66.7
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.7e-14 83.2 62 62.9
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 8.0e-14 82.4 55 70.9
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.3e-08 65.1 55 56.4
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.9e-07 61.2 43 62.8


User provided reference genes

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