Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0547900 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 0.0e+00 1662.5 1059 100.0
Os11g0599101 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 2.2e-141 507.7 1071 35.3
Os06g0681100 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 9.5e-137 492.3 577 50.4
Os11g0599000 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 3.9e-66 257.7 1074 27.3
Zm00001eb167550 Zea mays HOM05D016364 ORTHO05D018060 1.2e-62 246.1 508 36.4
Os11g0458500 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 4.8e-56 224.2 509 34.6
Os11g0598900 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.9e-52 212.2 515 33.2
Os11g0577700 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 4.1e-15 88.2 195 34.4
Manes.06G097300 Manihot esculenta HOM05D001961 ORTHO05D002286 8.6e-13 80.5 172 30.2
PGR083G2262 Punica granatum HOM05D001961 ORTHO05D002286 3.3e-12 78.6 170 29.4
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 4.3e-12 78.2 168 29.8
A06p19750 Brassica napus HOM05D001961 ORTHO05D002286 4.3e-12 78.2 166 30.1
BraA06t25054Z Brassica rapa HOM05D001961 ORTHO05D002286 4.3e-12 78.2 166 30.1
BcaC01g01766 Brassica carinata HOM05D001961 ORTHO05D002286 5.6e-12 77.8 166 30.1
C03p72130 Brassica napus HOM05D001961 ORTHO05D002286 5.6e-12 77.8 166 30.1
BolC3t19509H Brassica oleracea HOM05D001961 ORTHO05D002286 5.6e-12 77.8 166 30.1
Zm00001eb005070 Zea mays HOM05D001961 ORTHO05D002286 5.6e-12 77.8 165 30.9
Ah.02g113120 Amaranthus hybridus HOM05D001961 ORTHO05D002286 7.3e-12 77.4 168 31.5
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 1.2e-11 76.6 171 27.5
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 4.7e-11 74.7 170 28.8
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 4.7e-11 74.7 157 29.9
TAR622G0827 Trochodendron aralioides HOM05D001961 ORTHO05D002286 4.7e-11 74.7 172 29.1
MBI04_g20669_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 6.2e-11 74.3 169 31.4
Thhalv10010060m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.4e-10 73.2 168 29.2
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 3.1e-10 72.0 419 22.2
BcaC03g16564 Brassica carinata HOM05D001961 ORTHO05D002286 6.8e-10 70.9 159 28.3
C02p43790 Brassica napus HOM05D001961 ORTHO05D002286 6.8e-10 70.9 159 28.3
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 6.8e-10 70.9 439 21.6
Phvul.003G194200 Phaseolus vulgaris HOM05D001961 ORTHO05D002286 6.8e-10 70.9 170 28.8
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 8.9e-10 70.5 419 21.7
FvH4_5g15740 Fragaria vesca HOM05D001961 ORTHO05D002286 1.2e-09 70.1 415 20.2
Lj1g0021908 Lotus japonicus HOM05D001961 ORTHO05D002286 1.5e-09 69.7 170 28.8
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 1.5e-09 69.7 420 21.4
FAN18G4418 Fragaria x ananassa HOM05D001961 ORTHO05D002286 2.0e-09 69.3 415 20.5
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 2.0e-09 69.3 414 20.8
Carub.0005s1404 Capsella rubella HOM05D001961 ORTHO05D002286 2.6e-09 68.9 168 26.2
FAN08G2604 Fragaria x ananassa HOM05D001961 ORTHO05D002286 2.6e-09 68.9 417 20.4
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 2.6e-09 68.9 421 20.7
Hma1.2p1_0002F.1_g003390 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 3.4e-09 68.6 418 19.9
Medtr4g107470 Medicago truncatula HOM05D001961 ORTHO05D002286 4.4e-09 68.2 146 28.8
Sp5g14040 Schrenkiella parvula HOM05D001961 ORTHO05D002286 4.4e-09 68.2 415 21.4
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 9.9e-09 67.0 417 20.1
Oeu020375.1 Olea europaea HOM05D001961 ORTHO05D002286 9.9e-09 67.0 415 22.7
Sopen03g032420 Solanum pennellii HOM05D001961 ORTHO05D002286 9.9e-09 67.0 426 22.3
GSVIVG01008079001 Vitis vinifera HOM05D001961 ORTHO05D002286 9.9e-09 67.0 122 28.7
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 1.3e-08 66.6 427 22.2
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.3e-08 66.6 423 22.0
Solyc03g113370.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 1.3e-08 66.6 426 22.3
PGSC0003DMG400013181 Solanum tuberosum HOM05D001961 ORTHO05D002286 1.3e-08 66.6 404 21.5
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.7e-08 66.2 417 20.9
TWI15G0443 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.7e-08 66.2 436 21.3
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 2.9e-08 65.5 419 20.0
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 2.9e-08 65.5 173 28.9
Lj5C117T8 Lonicera japonica HOM05D001961 ORTHO05D002286 2.9e-08 65.5 424 20.3
PSO541G1898 Papaver somniferum HOM05D001961 ORTHO05D002286 2.9e-08 65.5 143 28.0
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 3.7e-08 65.1 422 20.1
Hund02679 Selenicereus undatus HOM05D001961 ORTHO05D002286 3.7e-08 65.1 480 21.7
Sc04g0002330 Simmondsia chinensis HOM05D001961 ORTHO05D002286 3.7e-08 65.1 428 21.7
BraA06t25050Z Brassica rapa HOM05D001961 ORTHO05D002286 4.9e-08 64.7 97 29.9
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 4.9e-08 64.7 117 31.6
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 8.3e-08 63.9 120 27.5
Sp5g14050 Schrenkiella parvula HOM05D001961 ORTHO05D002286 8.3e-08 63.9 97 33.0
Hund09373 Selenicereus undatus HOM05D001961 ORTHO05D002286 8.3e-08 63.9 425 21.2
Aqoxy3G03236 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.1e-07 63.5 123 27.6
CSS0045619 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.1e-07 63.5 146 26.0
PSO161G0075 Papaver somniferum HOM05D001961 ORTHO05D002286 1.1e-07 63.5 97 32.0
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 1.4e-07 63.2 429 21.2
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 1.4e-07 63.2 110 32.7
AL5G27220 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 1.9e-07 62.8 102 32.4
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.9e-07 62.8 422 20.9
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 1.9e-07 62.8 415 20.7
MD14G1192000 Malus domestica HOM05D001961 ORTHO05D002286 1.9e-07 62.8 145 28.3
PSO210G7105 Papaver somniferum HOM05D001961 ORTHO05D002286 1.9e-07 62.8 97 30.9
CSS0037638 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 2.4e-07 62.4 209 25.8
CDE06G2189 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 2.4e-07 62.4 420 20.7
MBI04_g20668_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 2.4e-07 62.4 161 28.6
Peaxi162Scf00009g00524 Petunia axillaris HOM05D001961 ORTHO05D002286 2.4e-07 62.4 412 20.9
BcaC01g01759 Brassica carinata HOM05D001961 ORTHO05D002286 3.2e-07 62.0 97 29.9
C03p72190 Brassica napus HOM05D001961 ORTHO05D002286 3.2e-07 62.0 97 29.9
BolC3t19515H Brassica oleracea HOM05D001961 ORTHO05D002286 3.2e-07 62.0 97 29.9
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 3.2e-07 62.0 119 23.5
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 3.2e-07 62.0 96 31.2
CsaV3_1G002070 Cucumis sativus L. HOM05D001961 ORTHO05D002286 3.2e-07 62.0 459 22.4
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 3.2e-07 62.0 423 21.5
Lsat_1_v5_gn_1_11560 Lactuca sativa HOM05D001961 ORTHO05D002286 3.2e-07 62.0 433 20.6
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 4.1e-07 61.6 413 21.5
Oeu039544.2 Olea europaea HOM05D001961 ORTHO05D002286 4.1e-07 61.6 432 21.1
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 4.1e-07 61.6 420 20.5
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 4.1e-07 61.6 419 20.5
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 5.4e-07 61.2 413 21.5
Aa31LG11G1000 Aethionema arabicum HOM05D001961 ORTHO05D002286 5.4e-07 61.2 86 31.4
arahy.Tifrunner.gnm1.ann1.DV6TYS Arachis hypogaea HOM05D001961 ORTHO05D002286 5.4e-07 61.2 431 22.3
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 5.4e-07 61.2 97 32.0
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 7.1e-07 60.8 423 21.3
SEGI_13866 Sequoiadendron giganteum HOM05D001961 ORTHO05D002286 7.1e-07 60.8 433 21.2
arahy.Tifrunner.gnm1.ann1.LMB17M Arachis hypogaea HOM05D001961 ORTHO05D002286 9.2e-07 60.5 431 21.6
CDE07G1845 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 9.2e-07 60.5 400 20.0
Lalb_Chr13g0298141 Lupinus albus HOM05D001961 ORTHO05D002286 9.2e-07 60.5 414 19.3
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.2e-06 60.1 119 22.7
Carub.0005s1403 Capsella rubella HOM05D001961 ORTHO05D002286 1.2e-06 60.1 102 32.4
Oeu022639.1 Olea europaea HOM05D001961 ORTHO05D002286 1.2e-06 60.1 412 20.6
Aa31LG4G16560 Aethionema arabicum HOM05D001961 ORTHO05D002286 1.6e-06 59.7 94 30.9
AT3G47910 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 1.6e-06 59.7 102 34.3
CSS0004686 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.6e-06 59.7 168 25.6
CARHR156620 Cardamine hirsuta HOM05D001961 ORTHO05D002286 2.1e-06 59.3 412 21.1
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 2.1e-06 59.3 90 27.8
Ca_21858_v3 Cicer arietinum L. HOM05D001961 ORTHO05D002286 2.7e-06 58.9 416 21.2
DCAR_021541 Daucus carota HOM05D001961 ORTHO05D002286 2.7e-06 58.9 409 18.8
Nitab4.5_0007282g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 2.7e-06 58.9 94 29.8
PSO161G0094 Papaver somniferum HOM05D001961 ORTHO05D002286 2.7e-06 58.9 87 32.2
Duzib205G1945 Durio zibethinus HOM05D001961 ORTHO05D002286 3.5e-06 58.5 422 21.8
Lalb_Chr12g0201211 Lupinus albus HOM05D001961 ORTHO05D002286 3.5e-06 58.5 422 19.4
Zm00001eb149140 Zea mays HOM05D004697 ORTHO05D018060 3.5e-06 58.5 70 44.3
Hma1.2p1_0104F.1_g050400 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 4.6e-06 58.2 94 28.7
CARHR056650 Cardamine hirsuta HOM05D003941 ORTHO05D011535 6.0e-06 57.8 128 26.6
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 7.8e-06 57.4 424 21.0
Dinv33704 Davidia involucrata HOM05D001961 ORTHO05D002286 7.8e-06 57.4 142 24.6
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 7.8e-06 57.4 409 19.8


User provided reference genes

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