Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 2.1e-181 639.0 349 100.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 6.7e-140 501.1 358 76.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.3e-98 364.0 310 61.6
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 8.3e-98 361.3 307 59.9
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.4e-97 358.6 288 62.8
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 7.1e-97 358.2 298 63.8
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 2.7e-96 356.3 288 63.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 3.5e-96 355.9 302 61.9
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 4.6e-96 355.5 303 60.4
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 6.0e-96 355.1 288 62.5
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.7e-95 353.6 312 63.1
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.3e-95 353.2 286 61.5
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.0e-95 352.8 292 62.0
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 3.0e-95 352.8 287 62.7
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 3.0e-95 352.8 304 60.2
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 3.9e-95 352.4 343 56.0
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.1e-95 352.1 317 61.8
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.1e-95 352.1 288 62.2
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 6.6e-95 351.7 314 59.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 6.6e-95 351.7 357 55.5
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 8.6e-95 351.3 330 58.2
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.1e-94 350.9 314 58.9
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-94 350.9 288 63.2
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 1.1e-94 350.9 289 62.6
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.3e-94 349.4 288 62.2
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 9.5e-94 347.8 359 56.3
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.2e-93 347.4 316 57.9
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.2e-93 347.4 329 56.8
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.6e-93 347.1 304 59.9
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.6e-93 347.1 330 60.3
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.7e-93 345.5 314 59.6
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.1e-93 344.7 304 59.9
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.1e-92 344.4 326 58.0
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.4e-92 344.0 310 59.0
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 2.3e-92 343.2 268 63.4
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.3e-92 343.2 303 58.7
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.3e-92 343.2 288 61.1
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 3.1e-92 342.8 335 55.8
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 4.0e-92 342.4 303 58.4
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 6.8e-92 341.7 370 53.5
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 6.8e-92 341.7 332 53.6
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.9e-92 341.3 351 55.6
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 8.9e-92 341.3 288 60.1
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 8.9e-92 341.3 306 59.2
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.2e-91 340.9 314 58.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.2e-91 340.9 335 55.5
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.5e-91 340.5 311 57.2
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.0e-91 340.1 288 62.2
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.6e-91 339.7 308 59.4
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 3.4e-91 339.3 289 59.5
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 4.4e-91 339.0 288 62.2
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 4.4e-91 339.0 288 62.2
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 5.8e-91 338.6 288 61.1
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 5.8e-91 338.6 288 61.1
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 5.8e-91 338.6 288 61.1
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 5.8e-91 338.6 288 60.1
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 5.8e-91 338.6 332 56.6
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 7.6e-91 338.2 288 61.8
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 7.6e-91 338.2 289 59.2
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 9.9e-91 337.8 289 59.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.7e-90 337.0 333 55.9
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.9e-90 336.3 312 55.4
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 2.9e-90 336.3 288 60.1
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 3.8e-90 335.9 303 58.7
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.9e-89 333.6 288 60.4
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.4e-89 333.2 327 55.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 2.4e-89 333.2 319 53.9
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 3.2e-89 332.8 288 58.7
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 7.1e-89 331.6 276 61.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 9.2e-89 331.3 299 57.9
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.6e-88 330.5 304 56.9
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 2.7e-88 329.7 305 54.4
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.0e-87 327.8 302 55.0
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.7e-87 327.0 332 55.1
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.7e-87 327.0 307 56.7
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.3e-87 326.6 262 63.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.9e-86 323.6 269 59.5
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 3.3e-86 322.8 262 61.1
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 4.3e-86 322.4 324 54.9
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 8.1e-85 318.2 259 60.2
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 6.9e-84 315.1 316 54.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 2.6e-83 313.2 261 60.2
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 4.9e-82 308.9 266 66.9
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 7.1e-81 305.1 287 57.1
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 4.6e-80 302.4 325 51.4
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 7.8e-80 301.6 262 58.0
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 3.9e-79 299.3 288 55.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.9e-78 297.0 251 62.2
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.5e-78 296.6 251 61.8
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.6e-78 295.4 264 58.0
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 9.6e-78 294.7 262 57.3
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.3e-77 294.3 263 56.3
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 4.8e-77 292.4 256 62.5
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.2e-77 292.0 263 55.9
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.5e-75 287.3 300 52.0
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.8e-75 285.4 262 53.4
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 3.8e-74 282.7 286 51.7
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 9.3e-73 278.1 234 61.1
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 9.3e-73 278.1 275 52.7
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.7e-72 276.6 249 58.2
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 6.0e-72 275.4 258 51.2
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.0e-72 275.4 258 51.2
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.3e-71 274.2 259 54.1
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.1e-71 272.3 274 51.1
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 5.1e-71 272.3 280 51.8
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 8.7e-71 271.6 249 55.4
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.1e-70 271.2 280 51.4
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 9.6e-70 268.1 278 50.0
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 9.6e-70 268.1 305 52.5
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.8e-68 263.8 278 49.6
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 3.1e-68 263.1 278 49.6
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 4.0e-68 262.7 280 50.4
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.2e-67 261.2 274 50.4
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.2e-67 261.2 296 48.0
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.5e-67 260.8 261 52.1
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.5e-67 260.8 261 54.4
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 2.6e-67 260.0 278 49.6
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.2e-66 256.9 259 51.7
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-66 256.9 258 48.1
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-66 256.9 258 48.1
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 8.4e-66 255.0 258 47.7
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 8.4e-66 255.0 258 47.7
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.1e-65 254.6 261 51.3
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.9e-65 253.8 290 47.9
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.5e-62 243.4 280 48.9
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.3e-61 241.1 244 61.1
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.6e-61 240.7 236 51.7
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.8e-61 240.0 257 52.1
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.4e-60 236.9 252 50.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.2e-59 234.6 236 50.0
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.2e-59 234.6 241 53.9
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.6e-59 233.4 191 62.3
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.6e-59 233.4 169 70.4
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.5e-57 226.9 235 51.1
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 2.3e-55 220.3 260 46.2
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.3e-55 220.3 260 46.5
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 3.9e-55 219.5 172 63.4
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 6.3e-53 212.2 261 47.1
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.8e-52 210.7 197 54.8
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 5.3e-52 209.1 201 55.2
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 8.7e-47 191.8 252 42.9
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 3.1e-44 183.3 249 45.4
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 7.7e-43 178.7 159 55.3
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.9e-42 176.8 185 50.8
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.9e-41 174.1 159 55.3
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.0e-39 166.8 393 32.8
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 2.8e-37 160.2 243 41.6
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.1e-36 156.8 153 54.2
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 9.4e-33 145.2 172 45.3
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.2e-32 144.8 147 53.7
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.6e-24 117.9 129 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.1e-24 117.5 228 36.0
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.3e-23 114.0 205 35.6
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.8e-21 107.1 67 74.6
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 7.7e-19 99.0 244 32.0
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 7.7e-19 99.0 92 55.4
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.7e-19 99.0 115 45.2
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 3.8e-18 96.7 183 38.3
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.5e-17 94.7 217 34.6
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-14 84.7 117 40.2
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 5.7e-14 82.8 99 51.5
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 6.3e-13 79.3 57 70.2
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.2e-11 75.1 52 59.6
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 9.5e-09 65.5 64 51.6
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 2.1e-08 64.3 75 52.0
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 2.8e-08 63.9 69 47.8
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 5.2e-07 59.7 68 45.6
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 5.2e-07 59.7 55 50.9
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 8.9e-07 58.9 57 54.4
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.5e-06 58.2 101 37.6
Zm00001eb207480 Zea mays HOM05D003990 ORTHO05D004925 2.6e-06 57.4 51 58.8
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.4e-06 57.0 68 45.6


User provided reference genes

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