Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.4e-141 505.0 253 100.0
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 9.2e-139 496.9 253 98.4
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.4e-115 419.9 248 81.9
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 5.4e-115 417.9 249 81.9
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.2e-114 416.8 250 81.2
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.2e-114 416.8 250 81.2
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.6e-114 416.4 250 81.2
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.7e-114 415.6 250 80.8
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.7e-114 415.6 249 81.1
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 3.5e-114 415.2 250 80.8
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 4.6e-114 414.8 245 81.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 4.6e-114 414.8 250 80.4
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 7.9e-114 414.1 240 82.9
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 7.9e-114 414.1 250 80.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 1.3e-113 413.3 250 80.4
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.8e-113 412.9 250 81.2
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.0e-113 412.1 249 79.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 3.0e-113 412.1 249 80.3
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 3.9e-113 411.8 250 79.6
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 6.7e-113 411.0 250 79.2
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 8.7e-113 410.6 249 80.7
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 8.7e-113 410.6 249 79.9
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 8.7e-113 410.6 249 79.9
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.1e-112 410.2 250 79.2
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.1e-112 410.2 249 80.7
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.1e-112 410.2 249 79.9
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.5e-112 409.8 250 79.2
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.5e-112 409.8 246 82.9
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.9e-112 409.5 249 79.9
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.9e-112 409.5 245 80.4
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.5e-112 409.1 249 80.7
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.3e-112 408.3 249 80.3
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 4.3e-112 408.3 249 79.9
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 5.6e-112 407.9 249 80.3
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 5.6e-112 407.9 250 78.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 9.6e-112 407.1 249 79.5
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.3e-111 406.8 249 81.1
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.6e-111 406.4 250 78.8
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.6e-111 406.4 249 79.5
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.6e-111 406.4 250 78.8
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.6e-111 406.4 250 80.0
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.1e-111 406.0 250 79.2
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.1e-111 406.0 249 81.1
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.1e-111 406.0 249 81.1
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 2.1e-111 406.0 246 82.5
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 2.8e-111 405.6 249 79.1
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 4.8e-111 404.8 249 78.7
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 4.8e-111 404.8 249 78.7
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 4.8e-111 404.8 250 78.4
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 6.2e-111 404.4 249 79.1
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 6.2e-111 404.4 249 78.7
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 6.2e-111 404.4 250 79.2
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 6.2e-111 404.4 246 82.1
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 8.1e-111 404.1 249 78.7
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.4e-110 403.3 250 78.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.4e-110 402.5 249 78.7
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 4.0e-110 401.7 249 77.1
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.0e-110 401.7 249 77.5
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.2e-109 400.2 249 77.1
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.2e-109 400.2 249 77.9
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.0e-109 399.4 249 77.1
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 7.6e-109 397.5 249 76.7
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 7.6e-109 397.5 250 76.4
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 9.9e-109 397.1 254 76.8
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.3e-108 396.7 249 76.3
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.7e-108 396.4 249 79.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 2.9e-108 395.6 250 76.0
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.8e-108 395.2 250 76.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.4e-108 394.4 257 75.1
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 8.4e-108 394.0 249 75.9
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 8.4e-108 394.0 249 75.9
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 8.4e-108 394.0 269 73.6
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.9e-107 392.9 249 75.9
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.9e-107 392.9 249 75.9
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.4e-107 392.5 249 76.3
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 2.4e-107 392.5 249 76.3
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 2.4e-107 392.5 249 76.3
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.4e-107 392.5 249 76.3
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 3.2e-107 392.1 249 75.9
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 3.2e-107 392.1 249 75.9
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 3.2e-107 392.1 250 78.4
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 4.2e-107 391.7 249 75.5
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 5.5e-107 391.3 249 75.5
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.6e-106 389.8 250 75.2
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 2.7e-106 389.0 267 73.8
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 5.1e-105 384.8 245 75.1
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 8.7e-105 384.0 233 79.8
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.9e-104 382.9 233 81.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 7.4e-104 380.9 296 67.6
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.6e-103 379.8 229 79.0
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 8.2e-103 377.5 296 64.9
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.7e-100 369.8 249 73.5
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.9e-100 369.0 245 74.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 8.4e-100 367.5 240 72.1
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.7e-98 362.5 358 55.9
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.3e-97 360.1 239 74.1
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.9e-97 358.6 244 73.0
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.4e-94 350.1 251 69.3
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.1e-94 348.6 254 70.1
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.4e-91 340.1 187 92.0
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.9e-91 339.7 217 76.0
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 3.6e-90 335.5 249 69.5
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 4.1e-86 322.0 236 69.1
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 4.1e-86 322.0 253 62.5
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 6.9e-86 321.2 249 65.5
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.4e-85 318.9 250 66.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.8e-81 304.3 193 75.6
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.4e-78 297.0 181 78.5
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.0e-76 288.5 194 74.2
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 3.6e-74 282.3 323 50.8
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.8e-71 272.7 240 52.5
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 3.8e-68 262.3 208 65.4
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.7e-63 246.9 249 49.4
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 3.7e-63 245.7 183 66.1
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 3.5e-61 239.2 152 75.7
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 7.7e-61 238.0 151 76.8
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.9e-59 233.4 210 61.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 3.4e-56 222.6 202 58.9
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.5e-51 207.2 250 49.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.0e-49 199.1 123 77.2
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.0e-45 186.8 246 43.5
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.5e-45 186.0 114 78.1
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.9e-45 185.3 99 87.9
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.3e-39 167.5 100 77.0
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.1e-38 164.5 254 35.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.8e-38 163.7 100 75.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 5.0e-36 155.6 114 66.7
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.2e-34 151.0 98 73.5
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.9e-31 139.8 158 55.1
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.4e-24 116.3 98 66.3
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.2e-18 97.8 67 68.7
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 5.8e-16 89.0 100 49.0
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 6.4e-15 85.5 55 76.4
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.2e-13 81.3 135 42.2
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 3.0e-12 76.6 44 77.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 2.1e-10 70.5 55 70.9
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 4.4e-08 62.8 30 90.0
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.3e-07 61.2 56 51.8


User provided reference genes

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