Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 1.0e-100 370.2 199 100.0
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 4.8e-66 255.0 160 81.2
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.5e-51 206.8 181 60.8
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.5e-51 206.8 181 60.8
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 2.2e-47 193.0 194 54.1
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 4.2e-46 188.7 185 54.1
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 2.1e-45 186.4 185 53.5
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 2.1e-45 186.4 185 53.5
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 6.1e-45 184.9 197 53.8
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 6.1e-45 184.9 170 57.1
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 6.1e-45 184.9 185 53.0
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 6.1e-45 184.9 170 57.1
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.4e-44 183.7 202 51.0
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 2.3e-44 183.0 185 54.6
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 4.0e-44 182.2 178 55.6
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 6.7e-44 181.4 171 56.1
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 8.8e-44 181.0 179 57.0
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 1.2e-43 180.6 197 50.3
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 2.6e-43 179.5 187 52.4
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 2.6e-43 179.5 187 52.4
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 3.3e-43 179.1 199 47.2
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 3.3e-43 179.1 183 53.6
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 3.3e-43 179.1 180 54.4
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 4.4e-43 178.7 183 53.6
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 4.4e-43 178.7 179 53.6
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 5.7e-43 178.3 171 56.1
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 7.5e-43 177.9 180 51.7
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 7.5e-43 177.9 173 54.3
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 9.7e-43 177.6 169 56.2
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.7e-42 176.8 185 51.9
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 1.7e-42 176.8 185 49.2
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 2.2e-42 176.4 187 52.4
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 2.2e-42 176.4 181 54.1
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 2.8e-42 176.0 185 53.5
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 2.8e-42 176.0 178 53.4
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 2.8e-42 176.0 178 53.9
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 4.8e-42 175.3 181 51.9
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 6.3e-42 174.9 177 53.7
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 1.8e-41 173.3 189 50.3
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 2.4e-41 172.9 184 49.5
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 2.4e-41 172.9 179 54.2
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 3.1e-41 172.6 179 54.2
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 4.1e-41 172.2 174 54.6
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 5.3e-41 171.8 184 48.9
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 5.3e-41 171.8 183 47.5
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 7.0e-41 171.4 190 50.0
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 7.0e-41 171.4 179 54.2
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.2e-40 170.6 182 50.5
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 1.2e-40 170.6 189 50.3
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 1.2e-40 170.6 196 49.0
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 1.6e-40 170.2 178 51.7
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 1.6e-40 170.2 172 52.3
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 2.0e-40 169.9 178 50.6
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.0e-40 169.9 180 50.0
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 3.5e-40 169.1 187 50.3
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 3.5e-40 169.1 180 49.4
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 3.5e-40 169.1 169 53.8
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 3.5e-40 169.1 174 51.7
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 4.5e-40 168.7 183 49.2
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 4.5e-40 168.7 181 49.2
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 4.5e-40 168.7 190 48.4
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 4.5e-40 168.7 178 51.1
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 7.7e-40 167.9 198 46.5
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 1.0e-39 167.5 181 49.2
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 1.0e-39 167.5 181 49.2
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 1.0e-39 167.5 181 49.2
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 1.0e-39 167.5 166 56.0
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.0e-39 167.5 179 50.8
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 1.7e-39 166.8 179 50.3
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 1.7e-39 166.8 183 49.7
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 1.7e-39 166.8 147 57.8
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 2.2e-39 166.4 181 48.6
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 2.2e-39 166.4 139 60.4
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 2.2e-39 166.4 181 50.3
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 2.2e-39 166.4 147 57.1
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.9e-39 166.0 174 51.7
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 2.9e-39 166.0 182 48.9
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 3.8e-39 165.6 179 48.6
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 3.8e-39 165.6 169 49.7
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 6.5e-39 164.9 182 48.9
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 6.5e-39 164.9 196 50.0
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 1.5e-38 163.7 161 54.0
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 2.5e-38 162.9 178 50.0
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 5.5e-38 161.8 182 47.3
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 7.2e-38 161.4 180 48.9
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.6e-37 160.2 167 50.9
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 1.6e-37 160.2 157 54.1
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 4.7e-37 158.7 181 48.6
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 4.7e-37 158.7 183 47.5
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 3.4e-35 152.5 165 50.9
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 5.7e-35 151.8 181 45.9
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 7.0e-33 144.8 138 50.7
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 1.6e-32 143.7 165 47.9
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 2.0e-32 143.3 165 48.5
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 1.0e-31 141.0 141 50.4
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 3.8e-31 139.0 178 43.8
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 1.1e-30 137.5 185 44.3
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 2.5e-30 136.3 152 52.0
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 2.3e-28 129.8 144 50.7
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.7e-26 123.6 144 49.3
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 2.8e-26 122.9 190 40.5
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 8.3e-26 121.3 178 41.0
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 1.8e-25 120.2 142 47.2
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 1.6e-24 117.1 193 39.4
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 3.5e-24 115.9 212 37.3
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 4.5e-24 115.5 113 53.1
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 5.9e-24 115.2 130 49.2
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 7.8e-24 114.8 153 39.9
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 2.8e-21 106.3 150 40.0
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 3.6e-21 105.9 122 48.4
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 2.3e-20 103.2 190 35.3
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 1.2e-19 100.9 183 38.3
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 8.3e-18 94.7 161 37.3
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 7.0e-17 91.7 135 42.2
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 6.8e-12 75.1 148 37.2
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 2.7e-08 63.2 69 55.1
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 7.8e-08 61.6 74 47.3
PRCOL_00003382 Prasinoderma coloniale HOM05D006904 ORTHO05D008439 1.1e-06 57.8 150 34.7
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.3e-06 56.2 58 44.8


User provided reference genes

Program Settings