Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.1e-87 325.9 191 100.0
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 3.3e-72 275.4 162 88.3
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 3.6e-71 271.9 162 88.3
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 3.0e-65 252.3 158 82.9
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.7e-65 251.1 162 81.5
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 3.3e-64 248.8 158 80.4
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 4.3e-64 248.4 158 82.3
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.3e-63 246.9 154 82.5
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.8e-63 245.7 159 79.2
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.8e-63 245.7 159 79.2
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 4.8e-63 245.0 156 81.4
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 6.2e-63 244.6 156 82.1
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.4e-62 243.4 156 81.4
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.4e-62 242.7 158 79.7
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 3.1e-62 242.3 160 78.8
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 6.9e-62 241.1 158 78.5
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.0e-62 240.7 160 76.9
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 9.0e-62 240.7 156 81.4
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.5e-61 240.0 160 76.9
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.5e-61 240.0 156 78.2
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.0e-61 239.6 160 76.9
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.0e-61 239.6 160 78.1
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 2.6e-61 239.2 156 78.2
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.4e-61 238.8 158 78.5
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 4.5e-61 238.4 156 80.8
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.5e-61 238.4 158 78.5
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 5.8e-61 238.0 158 77.8
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.8e-61 238.0 156 76.3
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 7.6e-61 237.7 156 77.6
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 7.6e-61 237.7 156 77.6
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.6e-61 237.7 156 77.6
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.3e-60 236.9 156 80.1
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.3e-60 236.9 158 77.2
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.7e-60 236.5 156 78.8
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.7e-60 236.5 159 76.7
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 2.2e-60 236.1 156 75.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.2e-60 236.1 158 76.6
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.9e-60 235.0 156 75.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 4.9e-60 235.0 156 77.6
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.4e-60 234.6 156 78.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 6.4e-60 234.6 158 75.3
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 8.4e-60 234.2 156 77.6
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 8.4e-60 234.2 153 78.4
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.1e-59 233.8 156 76.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.9e-59 233.0 158 77.2
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.9e-59 233.0 159 73.0
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 3.2e-59 232.3 160 75.0
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.2e-59 232.3 159 73.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.2e-59 232.3 156 76.9
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.2e-59 231.9 154 77.3
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 4.2e-59 231.9 158 75.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 4.2e-59 231.9 158 74.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 4.2e-59 231.9 159 72.3
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 4.2e-59 231.9 156 75.0
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 4.2e-59 231.9 156 75.0
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 5.5e-59 231.5 156 75.6
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 5.5e-59 231.5 156 75.6
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.5e-59 231.5 154 76.0
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.1e-59 231.1 156 77.6
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 9.3e-59 230.7 155 77.4
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 9.3e-59 230.7 154 77.3
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 9.3e-59 230.7 158 75.3
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.6e-58 229.9 156 75.0
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.6e-58 229.9 189 63.5
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.6e-58 229.9 156 75.0
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.6e-58 229.9 156 75.0
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.6e-58 229.9 156 75.0
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.1e-58 229.6 156 75.6
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 2.7e-58 229.2 156 74.4
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.7e-58 229.2 156 75.0
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.5e-58 228.8 156 74.4
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.6e-58 228.4 159 73.6
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 6.0e-58 228.0 189 63.5
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 6.0e-58 228.0 156 73.1
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.3e-57 226.9 156 73.7
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.8e-57 226.5 189 63.0
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 2.3e-57 226.1 158 72.8
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.3e-57 226.1 156 75.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.0e-57 225.7 156 73.7
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.9e-57 225.3 156 74.4
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 3.9e-57 225.3 156 73.1
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 3.9e-57 225.3 160 72.5
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.9e-57 225.3 158 72.2
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 5.1e-57 224.9 156 73.1
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 6.7e-57 224.6 189 63.0
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 8.7e-57 224.2 156 73.1
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.9e-56 223.0 158 73.4
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.9e-56 223.0 158 72.2
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.5e-56 222.6 158 73.4
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 7.4e-56 221.1 169 71.0
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 9.6e-56 220.7 156 71.8
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 9.6e-56 220.7 151 75.5
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.3e-55 220.3 158 69.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.6e-55 219.9 158 72.8
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 2.1e-55 219.5 156 71.2
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.1e-55 219.5 159 72.3
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.1e-55 219.5 156 72.4
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.8e-55 219.2 158 73.4
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 2.8e-55 219.2 156 71.8
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 8.1e-55 217.6 156 71.8
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 8.1e-55 217.6 158 70.3
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 8.1e-55 217.6 158 70.9
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.1e-54 217.2 153 73.2
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.8e-54 216.5 156 70.5
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 4.0e-54 215.3 157 73.2
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 4.0e-54 215.3 158 69.6
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 5.3e-54 214.9 156 69.2
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 5.3e-54 214.9 150 74.0
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 9.0e-54 214.2 168 67.9
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 9.0e-54 214.2 153 72.5
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.0e-52 210.7 158 67.7
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.7e-52 209.9 157 71.3
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.2e-50 203.8 158 69.0
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.6e-50 203.4 156 69.2
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 2.1e-50 203.0 142 73.9
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.1e-50 203.0 159 66.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.9e-49 198.7 176 59.7
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 8.7e-49 197.6 158 65.8
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 5.7e-48 194.9 133 75.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-46 190.7 134 72.4
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.4e-46 190.3 215 52.6
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 4.1e-46 188.7 158 65.8
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 4.5e-45 185.3 143 65.7
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 5.9e-45 184.9 156 65.4
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 5.9e-45 184.9 156 61.5
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.6e-45 184.5 158 63.9
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.7e-44 183.3 134 70.1
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.9e-43 179.9 161 62.1
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.6e-42 175.3 108 77.8
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.3e-41 173.7 106 81.1
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 3.9e-41 172.2 160 56.2
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 8.7e-41 171.0 129 65.9
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 7.4e-40 167.9 158 60.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.6e-39 166.8 158 59.5
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.4e-38 162.9 131 65.6
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 4.1e-38 162.2 199 50.8
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 4.1e-38 162.2 148 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.6e-37 159.5 145 53.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 3.4e-37 159.1 159 52.8
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.5e-36 154.8 140 52.1
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 5.5e-35 151.8 110 69.1
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.1e-34 148.3 104 74.0
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-33 147.1 155 58.1
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-32 144.1 93 74.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.0e-32 143.3 160 52.5
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.3e-32 142.5 130 58.5
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.4e-32 141.4 130 58.5
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.4e-32 141.4 130 60.0
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.3e-31 140.6 82 82.9
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.8e-31 139.4 129 58.9
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-30 137.5 95 72.6
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-30 137.1 130 58.5
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.2e-29 134.0 103 61.2
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.6e-18 95.9 86 64.0
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 5.7e-16 88.6 161 39.1
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 4.8e-15 85.5 86 55.8
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 7.7e-13 78.2 58 62.1
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.2e-11 72.8 104 49.0


User provided reference genes

Program Settings