Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 1.1e-179 633.3 336 100.0
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 8.1e-58 228.4 336 44.3
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 1.4e-57 227.6 346 42.2
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 2.4e-57 226.9 308 43.2
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 2.4e-57 226.9 338 42.6
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 2.4e-57 226.9 336 44.3
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 3.1e-57 226.5 329 43.2
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 4.0e-57 226.1 318 42.5
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 5.3e-57 225.7 345 42.0
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 5.3e-57 225.7 339 41.6
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 1.2e-56 224.6 344 41.3
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 1.2e-56 224.6 336 42.0
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 4.5e-56 222.6 322 46.0
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 5.8e-56 222.2 334 40.4
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 5.8e-56 222.2 343 40.5
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 7.6e-56 221.9 334 41.3
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 9.9e-56 221.5 322 42.2
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 9.9e-56 221.5 321 41.4
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.3e-55 221.1 347 40.3
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.3e-55 221.1 347 40.3
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 1.7e-55 220.7 333 40.8
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 2.2e-55 220.3 308 42.2
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 3.8e-55 219.5 344 44.2
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 6.4e-55 218.8 345 40.0
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 6.4e-55 218.8 351 41.6
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 8.4e-55 218.4 323 43.7
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 8.4e-55 218.4 336 41.1
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 1.1e-54 218.0 339 43.1
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 1.1e-54 218.0 343 39.9
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 1.1e-54 218.0 339 40.1
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 1.1e-54 218.0 343 40.2
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.4e-54 217.6 325 43.4
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 1.4e-54 217.6 328 40.9
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 2.4e-54 216.9 344 37.8
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 2.4e-54 216.9 319 41.4
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 3.2e-54 216.5 323 42.1
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 3.2e-54 216.5 343 39.9
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 3.2e-54 216.5 324 40.4
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 4.2e-54 216.1 307 42.0
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 4.2e-54 216.1 324 44.4
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 5.4e-54 215.7 319 41.1
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 5.4e-54 215.7 341 38.7
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 5.4e-54 215.7 316 41.5
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 1.2e-53 214.5 321 45.2
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 2.7e-53 213.4 320 44.7
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 2.7e-53 213.4 330 42.1
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 4.6e-53 212.6 320 49.1
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 4.6e-53 212.6 330 41.5
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 4.6e-53 212.6 321 42.1
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 6.0e-53 212.2 323 40.2
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 6.0e-53 212.2 348 44.3
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 7.9e-53 211.8 336 45.2
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 7.9e-53 211.8 330 41.5
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 7.9e-53 211.8 337 40.4
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 7.9e-53 211.8 322 42.5
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 1.0e-52 211.5 321 47.4
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.0e-52 211.5 320 41.2
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 1.3e-52 211.1 329 45.0
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 1.3e-52 211.1 322 41.3
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 1.3e-52 211.1 323 45.2
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 2.3e-52 210.3 327 40.7
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 2.3e-52 210.3 354 39.0
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 2.3e-52 210.3 317 41.0
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 3.0e-52 209.9 323 40.6
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 3.0e-52 209.9 332 45.8
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 3.0e-52 209.9 340 41.2
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 3.9e-52 209.5 336 42.9
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 3.9e-52 209.5 313 42.5
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 5.1e-52 209.1 329 40.1
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 5.1e-52 209.1 322 41.9
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 6.7e-52 208.8 307 42.3
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 8.7e-52 208.4 348 39.9
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 8.7e-52 208.4 319 41.1
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 8.7e-52 208.4 333 39.6
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 8.7e-52 208.4 321 44.9
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 8.7e-52 208.4 318 41.5
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 8.7e-52 208.4 317 42.0
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.1e-51 208.0 318 40.9
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 1.5e-51 207.6 322 47.5
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 1.5e-51 207.6 322 47.5
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.9e-51 207.2 333 39.6
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 1.9e-51 207.2 333 39.6
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 2.5e-51 206.8 323 48.6
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 2.5e-51 206.8 328 41.2
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 2.5e-51 206.8 317 39.7
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 3.3e-51 206.5 332 41.3
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 3.3e-51 206.5 329 44.1
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 3.3e-51 206.5 311 41.8
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 3.3e-51 206.5 309 47.6
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 4.3e-51 206.1 327 40.4
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 4.3e-51 206.1 322 44.4
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 4.3e-51 206.1 338 45.9
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 5.6e-51 205.7 331 42.3
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 7.4e-51 205.3 328 40.2
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 7.4e-51 205.3 342 44.7
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 9.6e-51 204.9 323 39.6
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 9.6e-51 204.9 316 42.4
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 1.3e-50 204.5 314 42.7
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 1.3e-50 204.5 314 42.7
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 1.3e-50 204.5 314 42.7
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 1.3e-50 204.5 334 39.5
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.3e-50 204.5 316 41.8
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 1.6e-50 204.1 344 43.0
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 2.1e-50 203.8 322 48.1
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 2.1e-50 203.8 323 38.4
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 3.7e-50 203.0 314 44.3
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 4.8e-50 202.6 319 45.5
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 8.1e-50 201.8 321 43.0
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 1.1e-49 201.4 347 38.3
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 9.0e-49 198.4 347 39.2
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 9.0e-49 198.4 331 39.0
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 1.5e-48 197.6 308 43.5
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 7.6e-48 195.3 332 46.7
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.0e-47 194.9 342 39.2
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 2.9e-47 193.4 345 42.3
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 2.9e-47 193.4 312 38.1
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.1e-46 191.4 264 44.7
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.9e-46 190.7 399 34.8
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 7.1e-46 188.7 338 37.0
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 7.1e-46 188.7 298 40.3
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 3.5e-45 186.4 292 40.8
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 5.7e-43 179.1 323 35.3
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 1.3e-42 177.9 304 45.1
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 1.6e-42 177.6 133 65.4
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 1.6e-42 177.6 123 71.5
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 1.6e-42 177.6 123 71.5
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 1.1e-41 174.9 135 65.9
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 1.4e-41 174.5 134 66.4
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 2.4e-41 173.7 140 64.3
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 4.0e-41 172.9 323 38.7
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 1.5e-40 171.0 265 40.0
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 1.5e-40 171.0 325 34.8
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 1.0e-39 168.3 306 38.2
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.9e-39 166.8 142 60.6
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 6.5e-39 165.6 114 69.3
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.4e-38 164.5 122 66.4
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 4.2e-38 162.9 316 37.0
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.2e-37 161.4 325 33.2
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.2e-37 161.4 117 65.8
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 2.7e-37 160.2 107 70.1
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 3.5e-37 159.8 107 70.1
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 6.1e-37 159.1 117 65.8
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 3.0e-36 156.8 290 36.6
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 6.7e-36 155.6 107 71.0
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.1e-35 154.8 275 37.1
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 1.3e-34 151.4 121 61.2
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 4.1e-33 146.4 96 71.9
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 2.6e-32 143.7 105 66.7
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 6.5e-31 139.0 271 35.1
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 8.5e-31 138.7 105 65.7
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 8.5e-31 138.7 106 62.3
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 9.4e-30 135.2 306 32.0
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 2.1e-29 134.0 96 66.7
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 2.3e-28 130.6 147 49.0
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 7.7e-24 115.5 89 64.0
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 1.0e-23 115.2 332 28.0
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 1.4e-22 111.3 248 34.3
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 9.4e-22 108.6 104 53.8
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.8e-20 104.4 94 59.6
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 1.5e-19 101.3 112 50.9
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 3.7e-18 96.7 95 50.5
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 6.3e-18 95.9 77 58.4
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.4e-17 94.7 87 55.2
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 7.7e-16 89.0 71 57.7
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 1.1e-14 85.1 71 56.3
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 9.4e-14 82.0 53 71.7
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 1.2e-13 81.6 69 58.0
Cre16.g648800 Chlamydomonas reinhardtii HOM05D003583 ORTHO05D004169 1.6e-13 81.3 86 52.3
Actinidia30051 Actinidia chinensis HOM05D003583 ORTHO05D004169 2.1e-13 80.9 99 42.4
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 4.7e-13 79.7 71 53.5
Os11g0463600 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 8.0e-13 79.0 220 33.2
MBI11_g07418_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 3.0e-12 77.0 97 40.2
Nn1g07991 Nelumbo nucifera HOM05D003583 ORTHO05D004169 3.9e-12 76.6 98 39.8
Ca_03474_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 1.1e-11 75.1 97 40.2
Nn5g26790 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.1e-11 75.1 108 45.4
CDE06G1446 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 2.0e-11 74.3 98 37.8
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 2.0e-11 74.3 98 38.8
Medtr7g055863 Medicago truncatula HOM05D003583 ORTHO05D004169 4.4e-11 73.2 97 39.2
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 5.7e-11 72.8 98 46.9
Lalb_Chr19g0125851 Lupinus albus HOM05D003583 ORTHO05D004169 1.4e-09 68.2 95 40.0
Sp2g19040 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.4e-09 68.2 99 39.4
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 7.0e-09 65.9 98 42.9


User provided reference genes

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