Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 3.1e-87 325.1 166 100.0
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 1.9e-47 193.0 164 61.6
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 6.6e-45 184.5 157 63.1
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 7.3e-44 181.0 155 57.4
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 5.8e-41 171.4 163 51.5
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 1.7e-40 169.9 148 52.0
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 6.4e-40 167.9 155 51.0
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.4e-39 166.8 153 49.7
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.4e-39 166.8 151 53.6
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 1.4e-39 166.8 146 51.4
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 1.4e-39 166.8 151 49.0
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 1.9e-39 166.4 158 48.1
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 2.4e-39 166.0 146 51.4
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 2.4e-39 166.0 144 51.4
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.2e-39 165.6 146 49.3
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 3.2e-39 165.6 157 48.4
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 4.2e-39 165.2 146 50.0
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 5.4e-39 164.9 146 50.0
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 5.4e-39 164.9 146 50.7
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 7.1e-39 164.5 149 50.3
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 9.3e-39 164.1 148 52.0
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 9.3e-39 164.1 144 53.5
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 1.6e-38 163.3 158 48.7
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 2.1e-38 162.9 158 48.7
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 2.1e-38 162.9 148 48.6
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 2.1e-38 162.9 147 52.4
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 2.7e-38 162.5 146 50.7
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 2.7e-38 162.5 155 49.0
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 2.7e-38 162.5 155 49.0
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 3.5e-38 162.2 151 47.0
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 3.5e-38 162.2 146 50.0
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 4.6e-38 161.8 147 53.1
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 4.6e-38 161.8 146 48.6
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 4.6e-38 161.8 146 49.3
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 4.6e-38 161.8 146 50.0
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 4.6e-38 161.8 148 48.6
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 6.0e-38 161.4 148 50.0
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 6.0e-38 161.4 153 49.0
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 7.9e-38 161.0 158 46.8
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 7.9e-38 161.0 144 50.7
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 1.0e-37 160.6 146 49.3
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 1.0e-37 160.6 146 50.7
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 1.0e-37 160.6 155 49.0
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 1.0e-37 160.6 155 49.0
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 1.0e-37 160.6 146 50.0
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 1.3e-37 160.2 146 49.3
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 1.3e-37 160.2 145 49.0
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.8e-37 159.8 158 46.8
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 1.8e-37 159.8 146 49.3
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 2.3e-37 159.5 159 46.5
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 2.3e-37 159.5 144 50.0
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 3.0e-37 159.1 146 50.0
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 3.9e-37 158.7 159 47.2
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 3.9e-37 158.7 142 51.4
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 3.9e-37 158.7 148 49.3
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 3.9e-37 158.7 146 49.3
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 5.1e-37 158.3 149 46.3
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 5.1e-37 158.3 159 46.5
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 5.1e-37 158.3 144 49.3
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 5.1e-37 158.3 148 46.6
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 5.1e-37 158.3 146 49.3
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 5.1e-37 158.3 141 50.4
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 6.7e-37 157.9 142 50.7
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 6.7e-37 157.9 155 46.5
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 6.7e-37 157.9 148 48.6
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 6.7e-37 157.9 151 44.4
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 8.7e-37 157.5 159 46.5
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 8.7e-37 157.5 159 46.5
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 8.7e-37 157.5 144 47.2
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 1.1e-36 157.1 158 46.2
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.1e-36 157.1 159 47.8
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 1.5e-36 156.8 146 47.3
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 1.5e-36 156.8 142 51.4
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.5e-36 156.8 158 45.6
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 1.5e-36 156.8 146 48.6
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.5e-36 156.8 141 51.1
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 1.5e-36 156.8 146 48.6
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 1.9e-36 156.4 144 50.0
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 2.5e-36 156.0 146 47.9
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 3.3e-36 155.6 142 47.2
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 3.3e-36 155.6 144 47.9
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 4.3e-36 155.2 146 47.3
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 4.3e-36 155.2 144 47.9
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 4.3e-36 155.2 154 45.5
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 4.3e-36 155.2 149 47.0
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 5.6e-36 154.8 146 47.9
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 5.6e-36 154.8 146 49.3
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 5.6e-36 154.8 146 49.3
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 9.6e-36 154.1 150 46.7
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 9.6e-36 154.1 155 45.2
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 1.3e-35 153.7 155 43.9
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.3e-35 153.7 159 47.8
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.6e-35 153.3 153 45.8
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 2.1e-35 152.9 151 47.7
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 2.1e-35 152.9 154 44.2
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.1e-35 152.9 142 47.9
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 3.7e-35 152.1 151 47.0
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 4.8e-35 151.8 144 45.8
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 8.1e-35 151.0 144 45.8
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 8.1e-35 151.0 155 43.2
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 1.1e-34 150.6 150 45.3
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 1.4e-34 150.2 144 48.6
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 1.8e-34 149.8 151 45.7
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.8e-34 149.8 146 48.6
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.8e-34 149.8 145 47.6
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 3.1e-34 149.1 139 49.6
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 4.0e-34 148.7 155 43.2
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 4.0e-34 148.7 144 45.8
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 4.0e-34 148.7 151 45.0
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 6.9e-34 147.9 151 45.7
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 9.0e-34 147.5 151 45.0
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 3.4e-33 145.6 147 49.0
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 3.4e-33 145.6 147 48.3
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 7.6e-33 144.4 158 43.7
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 1.1e-31 140.6 142 45.8
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 2.7e-30 136.0 117 50.4
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 2.3e-29 132.9 147 49.0
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 8.7e-29 131.0 143 49.0
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 1.1e-28 130.6 132 47.0
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.1e-26 124.0 119 47.9
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 6.9e-26 121.3 122 44.3
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 5.8e-25 118.2 145 42.1
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.9e-24 115.9 122 45.9
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 3.8e-24 115.5 97 53.6
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 5.0e-24 115.2 142 41.5
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 2.1e-22 109.8 95 54.7
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 1.6e-19 100.1 101 46.5
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 1.8e-18 96.7 148 37.2
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 4.1e-18 95.5 130 38.5
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 9.0e-18 94.4 149 34.2
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 2.6e-17 92.8 104 41.3
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.1e-15 87.4 82 47.6
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 7.2e-15 84.7 83 50.6
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 3.3e-12 75.9 75 46.7


User provided reference genes

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