Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.5e-308 1062.0 544 100.0
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.1e-258 896.3 545 83.9
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.0e-232 808.1 547 75.7
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 3.4e-231 805.1 545 76.5
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 5.3e-200 701.4 526 66.2
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.5e-199 698.4 530 65.3
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.7e-198 696.4 530 65.3
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 3.8e-198 695.3 531 64.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.1e-197 693.7 531 63.8
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.5e-197 692.6 530 64.7
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 3.2e-197 692.2 530 64.9
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 5.5e-197 691.4 535 63.6
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.6e-196 688.3 534 63.5
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 6.1e-196 688.0 535 63.9
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.0e-195 687.2 537 62.9
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 2.3e-195 686.0 531 64.2
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 3.0e-195 685.6 535 63.7
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.0e-195 685.6 533 64.0
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 5.1e-195 684.9 531 64.0
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 6.7e-195 684.5 535 63.6
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.5e-194 683.3 531 64.0
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-194 683.3 532 63.2
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.0e-194 682.9 541 62.7
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.5e-194 682.6 532 63.5
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 3.3e-194 682.2 532 63.2
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 5.7e-194 681.4 532 63.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 9.7e-194 680.6 532 63.0
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 9.7e-194 680.6 532 63.9
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 9.7e-194 680.6 533 63.4
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.1e-192 677.2 530 64.3
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.4e-192 676.0 527 63.2
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.4e-192 676.0 535 63.2
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 4.1e-192 675.2 530 63.0
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 6.9e-192 674.5 526 63.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.0e-191 672.9 531 62.7
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.6e-191 672.5 534 62.5
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 3.4e-191 672.2 541 61.6
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.5e-191 671.8 528 64.4
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 4.5e-191 671.8 532 62.8
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 5.9e-191 671.4 531 63.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.0e-190 670.6 527 61.5
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-190 670.2 532 62.4
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-190 670.2 532 62.4
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-190 670.2 532 62.4
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.3e-190 670.2 531 63.1
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.2e-190 669.5 471 69.0
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.9e-190 669.1 531 62.5
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.9e-190 669.1 534 62.0
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 6.5e-190 667.9 527 63.2
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.9e-189 666.4 527 63.9
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 7.2e-189 664.5 532 60.7
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.2e-188 663.7 524 62.8
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.1e-188 662.9 535 60.6
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 4.7e-188 661.8 529 61.4
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 4.7e-188 661.8 521 62.6
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 4.7e-188 661.8 529 61.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-187 659.4 529 61.2
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 3.0e-187 659.1 473 67.4
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.9e-187 658.7 528 61.2
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.9e-187 658.7 527 62.6
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.1e-187 658.3 533 61.2
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 6.7e-187 657.9 528 63.1
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 6.7e-187 657.9 529 63.5
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.6e-186 656.0 533 60.8
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 5.7e-186 654.8 528 60.8
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.7e-186 654.8 494 65.0
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 7.4e-186 654.4 473 67.0
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.3e-185 653.7 543 58.2
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.7e-185 653.3 501 62.9
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.7e-185 653.3 472 67.2
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 2.8e-185 652.5 540 60.7
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 6.3e-185 651.4 536 60.4
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.4e-184 650.2 531 60.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.4e-184 649.4 528 60.2
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.4e-184 649.4 534 60.3
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.5e-183 646.7 531 60.3
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.0e-183 646.4 527 60.9
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.5e-183 645.6 528 60.4
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 5.9e-183 644.8 535 60.7
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.0e-182 644.0 529 61.4
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.0e-182 644.0 528 61.7
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 6.5e-182 641.3 529 59.4
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.5e-182 641.3 529 59.7
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 6.5e-182 641.3 529 59.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.9e-181 639.8 515 62.5
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 6.1e-180 634.8 530 60.0
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 6.1e-180 634.8 526 61.4
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.7e-179 631.3 524 61.3
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.7e-177 626.7 527 59.0
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.2e-177 626.3 529 57.8
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 8.2e-177 624.4 533 59.5
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 4.1e-176 622.1 531 60.1
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.3e-176 621.7 528 59.1
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.0e-174 617.5 534 57.5
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.9e-174 615.9 529 57.5
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.9e-174 615.9 540 57.6
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.9e-173 613.2 445 67.2
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.5e-173 612.8 512 60.0
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 5.5e-173 611.7 539 57.0
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 6.1e-172 608.2 534 57.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 6.1e-172 608.2 535 58.7
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 6.7e-171 604.7 531 55.9
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.5e-170 603.6 529 55.6
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 3.7e-169 599.0 528 56.2
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 8.3e-169 597.8 522 57.7
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.1e-168 597.4 466 62.0
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.8e-168 596.7 522 57.7
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 3.1e-168 595.9 530 55.1
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 4.1e-168 595.5 531 55.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.6e-167 593.6 523 56.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.0e-166 590.9 465 60.6
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.9e-165 586.6 458 64.4
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 4.5e-159 565.5 437 64.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.7e-153 545.8 527 52.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.0e-151 540.0 399 65.2
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.5e-149 533.1 397 65.7
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.5e-146 523.9 467 55.7
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.8e-146 521.2 394 63.7
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-145 520.4 537 49.7
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.7e-135 486.5 533 48.8
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 7.3e-133 478.4 403 57.1
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.0e-127 458.8 391 55.8
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.8e-123 447.2 474 46.0
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 5.2e-123 445.7 320 65.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-121 441.0 364 60.7
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 6.4e-121 438.7 356 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 5.4e-120 435.6 565 43.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.3e-117 426.0 461 46.0
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.1e-116 421.8 325 62.8
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 5.8e-114 415.6 539 41.7
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 4.2e-104 382.9 565 37.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.3e-86 323.9 226 68.6
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.0e-73 282.0 255 56.1
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 9.7e-69 265.4 197 65.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.2e-57 227.6 183 60.1
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-50 205.3 151 64.2
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 3.5e-50 203.8 180 58.9
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 4.1e-43 180.3 173 50.3
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-38 165.6 168 48.8
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 8.9e-38 162.5 135 60.7
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 3.5e-34 150.6 153 53.6
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.7e-31 140.2 139 52.5
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.8e-30 138.3 97 64.9
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 2.9e-28 131.0 129 54.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.7e-25 121.7 150 44.7
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 6.2e-23 113.2 150 42.0
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.7e-18 97.8 507 23.7
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 3.6e-15 87.4 74 59.5
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 6.8e-14 83.2 71 52.1
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.1e-11 75.9 67 50.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.1e-11 75.9 67 50.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.3e-09 68.9 68 54.4
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 5.1e-09 67.0 45 68.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 7.3e-08 63.2 46 63.0


User provided reference genes

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